Variant report

Variant	rs2213912
Chromosome Location	chr9:118087831-118087832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10739436	0.93[ASN][1000 genomes]
rs10739438	0.92[ASN][1000 genomes]
rs10759769	0.93[ASN][1000 genomes]
rs10759770	0.92[ASN][1000 genomes]
rs10817751	0.84[EUR][1000 genomes]
rs10982682	0.83[EUR][1000 genomes]
rs10982700	0.84[EUR][1000 genomes]
rs13300054	0.84[EUR][1000 genomes]
rs2027155	0.93[ASN][1000 genomes]
rs2418334	0.84[EUR][1000 genomes]
rs2418335	0.84[EUR][1000 genomes]
rs7047151	0.93[ASN][1000 genomes]
rs7870144	0.90[ASN][1000 genomes]
rs7874336	0.84[EUR][1000 genomes]
rs964631	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118087600-118089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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