Variant report

Variant	rs10759770
Chromosome Location	chr9:118091543-118091544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118083847..118086640-chr9:118089259..118091798,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10739435	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10739436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10739438	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs10759769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759771	0.90[JPT][hapmap]
rs1335335	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1577414	0.81[EUR][1000 genomes]
rs1981499	0.85[JPT][hapmap]
rs2027155	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2157660	0.82[EUR][1000 genomes]
rs2213912	0.92[ASN][1000 genomes]
rs2285317	0.90[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2285318	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3814957	0.90[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4979517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7018812	0.84[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs7034237	0.90[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7047151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7870144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs849033	0.82[EUR][1000 genomes]
rs964631	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118089000-118091600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:118089000-118091600	Enhancers	NHDF-Ad	bronchial
3	chr9:118089000-118091800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:118090800-118091600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:118091000-118091600	Enhancers	Fetal Intestine Small	intestine
6	chr9:118091000-118095000	Weak transcription	Fetal Lung	lung
7	chr9:118091200-118091600	Enhancers	Osteobl	bone
8	chr9:118091200-118092800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:118091400-118091600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:118091400-118091800	Weak transcription	Small Intestine	intestine
11	chr9:118091400-118092800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:118091400-118092800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:118091400-118092800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr9:118091400-118093000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:118091400-118095200	Weak transcription	Fetal Stomach	stomach
16	chr9:118091400-118095800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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