Variant report

Variant	rs1335335
Chromosome Location	chr9:118073084-118073085
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10739435	0.91[CEU][hapmap]
rs10739436	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs10739438	0.84[EUR][1000 genomes]
rs10759768	0.91[CEU][hapmap]
rs10759769	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs10759770	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2027155	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs2285317	0.81[EUR][1000 genomes]
rs2285318	0.81[EUR][1000 genomes]
rs3814957	0.81[EUR][1000 genomes]
rs4979517	0.91[CEU][hapmap]
rs7018812	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs7034237	0.81[EUR][1000 genomes]
rs7047151	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7870144	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs964631	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118060000-118073200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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