Variant report

Variant	rs3814957
Chromosome Location	chr9:118093007-118093008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118091992..118094872-chr9:118096955..118099916,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf91-5	chr9:118092582-118093609	NONHSAT134411

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10739435	0.86[CEU][hapmap];0.86[CHB][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap]
rs10739436	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10739438	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10759768	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10759769	0.85[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10759770	0.90[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10759771	0.81[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10759772	0.85[ASN][1000 genomes]
rs1335335	0.81[EUR][1000 genomes]
rs1577414	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1981499	0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2027155	0.86[CEU][hapmap];0.86[CHB][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2157660	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285318	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4534190	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4979517	0.86[CEU][hapmap];0.86[CHB][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs6478158	0.86[ASN][1000 genomes]
rs7018812	0.86[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7028273	0.91[MKK][hapmap]
rs7034237	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7047151	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7870144	0.86[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs849033	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs964631	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118091000-118095000	Weak transcription	Fetal Lung	lung
2	chr9:118091400-118095200	Weak transcription	Fetal Stomach	stomach
3	chr9:118091400-118095800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:118091600-118095800	Weak transcription	NHDF-Ad	bronchial
6	chr9:118092800-118093200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:118092800-118093600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:118092800-118093600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:118093000-118093200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:118093000-118093200	Enhancers	Small Intestine	intestine
11	chr9:118093000-118093600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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