Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118091992..118094872-chr9:118096955..118099916,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf91-5	chr9:118092582-118093609	NONHSAT134411

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10739436	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10739438	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10759769	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10759770	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10759771	0.86[ASN][1000 genomes]
rs10759772	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1335335	0.81[EUR][1000 genomes]
rs1577414	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1981499	0.86[ASN][1000 genomes]
rs2027155	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2157660	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2285317	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814957	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4534190	0.85[ASN][1000 genomes]
rs6478158	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7018812	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7034237	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047151	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7870144	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs849033	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs964631	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118091000-118095000	Weak transcription	Fetal Lung	lung
2	chr9:118091400-118095200	Weak transcription	Fetal Stomach	stomach
3	chr9:118091400-118095800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:118091600-118095800	Weak transcription	NHDF-Ad	bronchial
6	chr9:118092800-118093600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:118092800-118093600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:118093000-118093600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:118093200-118093600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr9:118093200-118095200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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