Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118072207..118074478-chr9:118077009..118079074,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10739435	0.80[GIH][hapmap];0.81[JPT][hapmap]
rs10739436	0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs10739438	0.80[EUR][1000 genomes]
rs10759768	0.81[JPT][hapmap]
rs10759769	0.80[CHB][hapmap];0.82[EUR][1000 genomes]
rs10759770	0.84[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs10759771	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs1335335	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs1577414	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1981499	0.86[JPT][hapmap]
rs2027155	0.80[GIH][hapmap];0.83[EUR][1000 genomes]
rs2157660	0.95[ASN][1000 genomes]
rs2285317	0.90[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285318	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3814957	0.86[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4979517	0.80[GIH][hapmap]
rs7034237	0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7047151	0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs7870144	0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs849033	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs964631	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7018812	KIAA1958	cis	parietal	SCAN
rs7018812	RGS3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118073400-118074800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: