Variant report

Variant	rs2157660
Chromosome Location	chr9:118076534-118076535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10739436	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10739438	0.81[AMR][1000 genomes]
rs10759769	0.82[EUR][1000 genomes]
rs10759770	0.82[EUR][1000 genomes]
rs1577414	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1981499	0.81[ASN][1000 genomes]
rs2027155	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2285317	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285318	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3814957	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4534190	0.80[ASN][1000 genomes]
rs6478158	0.80[ASN][1000 genomes]
rs7018812	0.95[ASN][1000 genomes]
rs7034237	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7047151	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7870144	0.82[EUR][1000 genomes]
rs849033	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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