Variant report

Variant	rs10759771
Chromosome Location	chr9:118097021-118097022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10739435	0.81[JPT][hapmap]
rs10739436	0.81[JPT][hapmap]
rs10759768	0.81[JPT][hapmap]
rs10759769	0.81[JPT][hapmap]
rs10759770	0.90[JPT][hapmap]
rs10759772	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981499	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285317	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2285318	0.86[ASN][1000 genomes]
rs3814957	0.81[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4534190	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4979517	0.85[JPT][hapmap]
rs6478158	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7018812	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs7034237	0.81[CHB][hapmap];0.92[CHD][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7047151	0.81[JPT][hapmap]
rs7870144	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10759771	SUSD1	cis	cerebellum	SCAN
rs10759771	WDR31	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118096400-118097800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:118096800-118098200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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