Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118091992..118094872-chr9:118096955..118099916,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10817747	0.83[AFR][1000 genomes]
rs10982682	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982704	0.90[AFR][1000 genomes]
rs10982705	0.85[AFR][1000 genomes]
rs10982706	0.85[AFR][1000 genomes]
rs10982707	0.85[AFR][1000 genomes]
rs11791380	0.86[AFR][1000 genomes]
rs12336615	0.88[AFR][1000 genomes]
rs13300054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213912	0.84[EUR][1000 genomes]
rs2418334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350049	0.85[AFR][1000 genomes]
rs4461971	0.85[AFR][1000 genomes]
rs4593631	0.85[AFR][1000 genomes]
rs72748112	0.88[AFR][1000 genomes]
rs7849100	0.85[AFR][1000 genomes]
rs7849386	0.85[AFR][1000 genomes]
rs7858288	0.88[AFR][1000 genomes]
rs7859677	0.88[AFR][1000 genomes]
rs7864546	0.80[AFR][1000 genomes]
rs7869481	0.88[AFR][1000 genomes]
rs7870064	0.88[AFR][1000 genomes]
rs7870220	0.83[AFR][1000 genomes]
rs7873749	0.88[AFR][1000 genomes]
rs7874336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118099400-118104400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: