Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118099941..118102566-chr9:118106314..118109013,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10817751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982682	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982704	0.93[AFR][1000 genomes]
rs10982705	0.91[AFR][1000 genomes]
rs10982706	0.91[AFR][1000 genomes]
rs10982707	0.91[AFR][1000 genomes]
rs11791380	0.93[AFR][1000 genomes]
rs12336615	0.95[AFR][1000 genomes]
rs13300054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213912	0.84[EUR][1000 genomes]
rs2418335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350049	0.91[AFR][1000 genomes]
rs4461971	0.91[AFR][1000 genomes]
rs4593631	0.91[AFR][1000 genomes]
rs72748112	0.95[AFR][1000 genomes]
rs7849100	0.91[AFR][1000 genomes]
rs7849386	0.91[AFR][1000 genomes]
rs7858288	0.95[AFR][1000 genomes]
rs7859677	0.95[AFR][1000 genomes]
rs7864546	0.87[AFR][1000 genomes]
rs7869481	0.95[AFR][1000 genomes]
rs7870064	0.95[AFR][1000 genomes]
rs7870220	0.90[AFR][1000 genomes]
rs7873749	0.95[AFR][1000 genomes]
rs7874336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv512115	chr9:118108750-118110440	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118104400-118110400	Weak transcription	NHDF-Ad	bronchial
2	chr9:118106200-118110200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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