Variant report

Variant	rs10818690
Chromosome Location	chr9:101023766-101023767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100835138..100837657-chr9:101023286..101025841,2	MCF-7	breast:
2	chr9:101010177..101013807-chr9:101023006..101027119,4	K562	blood:
3	chr9:101022063..101024175-chr9:101026064..101028233,2	K562	blood:
4	chr9:100966646..100969743-chr9:101023259..101026194,3	K562	blood:
5	chr9:101016008..101018748-chr9:101020851..101024407,3	MCF-7	breast:
6	chr9:100686308..100689678-chr9:101021142..101024168,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10115971	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10123643	0.91[ASN][1000 genomes]
rs10124977	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10760210	0.86[ASN][1000 genomes]
rs10760216	0.92[ASN][1000 genomes]
rs10760217	0.92[ASN][1000 genomes]
rs10760218	0.92[ASN][1000 genomes]
rs10818627	0.92[ASN][1000 genomes]
rs10818640	0.92[ASN][1000 genomes]
rs10818644	0.92[ASN][1000 genomes]
rs10818645	0.92[ASN][1000 genomes]
rs10818646	0.92[ASN][1000 genomes]
rs10818648	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10818656	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10818658	0.92[ASN][1000 genomes]
rs10818662	0.92[ASN][1000 genomes]
rs10818666	0.92[ASN][1000 genomes]
rs10818667	0.86[ASN][1000 genomes]
rs10818668	0.86[ASN][1000 genomes]
rs10818672	0.92[ASN][1000 genomes]
rs10818676	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10818677	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10818678	0.92[ASN][1000 genomes]
rs10818689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10818691	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10818692	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10818693	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10818743	0.83[AMR][1000 genomes]
rs10985517	0.84[ASN][1000 genomes]
rs10985580	0.86[ASN][1000 genomes]
rs10985583	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10985634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985641	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985642	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985653	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985669	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985680	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985689	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985711	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985720	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985743	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10985745	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10985757	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10985765	0.83[AMR][1000 genomes]
rs10985772	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10985779	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10985780	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12237988	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12342612	0.82[ASN][1000 genomes]
rs12346750	0.92[ASN][1000 genomes]
rs1435253	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1435257	0.86[ASN][1000 genomes]
rs1573024	0.92[ASN][1000 genomes]
rs1573025	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17766883	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17766913	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935389	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2900380	0.92[ASN][1000 genomes]
rs4379551	0.92[ASN][1000 genomes]
rs4742719	0.92[ASN][1000 genomes]
rs4742721	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4742722	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743187	0.92[ASN][1000 genomes]
rs4743188	0.86[ASN][1000 genomes]
rs4743192	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743194	0.86[ASN][1000 genomes]
rs56262782	0.89[ASN][1000 genomes]
rs62574277	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62574288	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62574300	0.92[ASN][1000 genomes]
rs6478630	0.86[ASN][1000 genomes]
rs6478631	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67569753	0.86[ASN][1000 genomes]
rs7025781	0.84[ASN][1000 genomes]
rs7032046	0.90[ASN][1000 genomes]
rs7042576	0.86[ASN][1000 genomes]
rs7045158	0.84[ASN][1000 genomes]
rs7853442	0.86[ASN][1000 genomes]
rs7853847	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7859655	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7868451	0.84[ASN][1000 genomes]
rs7873849	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7874856	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs879368	0.92[ASN][1000 genomes]
rs879369	0.86[ASN][1000 genomes]
rs9696283	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9802466	0.83[AMR][1000 genomes]
rs9802650	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101019200-101024800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:101019400-101024400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:101019400-101024400	Weak transcription	HSMM	muscle
4	chr9:101019600-101024000	Weak transcription	HSMMtube	muscle
5	chr9:101019600-101024400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:101019600-101026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101019600-101027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:101020200-101024400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101023400-101024400	Weak transcription	K562	blood
10	chr9:101023600-101026200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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