Variant report

Variant	rs62574300
Chromosome Location	chr9:101035621-101035622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101034358..101036194-chr9:101038260..101041518,3	K562	blood:
2	chr9:101034397..101036575-chr9:101039828..101041518,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10115971	0.95[ASN][1000 genomes]
rs10123643	0.84[ASN][1000 genomes]
rs10124977	0.95[ASN][1000 genomes]
rs10760216	0.85[ASN][1000 genomes]
rs10760217	0.85[ASN][1000 genomes]
rs10760218	0.85[ASN][1000 genomes]
rs10818627	0.85[ASN][1000 genomes]
rs10818640	0.85[ASN][1000 genomes]
rs10818644	0.85[ASN][1000 genomes]
rs10818645	0.85[ASN][1000 genomes]
rs10818646	0.85[ASN][1000 genomes]
rs10818648	0.87[ASN][1000 genomes]
rs10818656	0.87[ASN][1000 genomes]
rs10818658	0.85[ASN][1000 genomes]
rs10818662	0.85[ASN][1000 genomes]
rs10818666	0.85[ASN][1000 genomes]
rs10818672	0.85[ASN][1000 genomes]
rs10818676	0.87[ASN][1000 genomes]
rs10818677	0.87[ASN][1000 genomes]
rs10818678	0.85[ASN][1000 genomes]
rs10818689	0.92[ASN][1000 genomes]
rs10818690	0.92[ASN][1000 genomes]
rs10818691	0.95[ASN][1000 genomes]
rs10818692	1.00[ASN][1000 genomes]
rs10818693	1.00[ASN][1000 genomes]
rs10818739	0.85[ASN][1000 genomes]
rs10818743	0.84[ASN][1000 genomes]
rs10985583	0.87[ASN][1000 genomes]
rs10985634	0.92[ASN][1000 genomes]
rs10985641	1.00[ASN][1000 genomes]
rs10985642	1.00[ASN][1000 genomes]
rs10985653	1.00[ASN][1000 genomes]
rs10985669	1.00[ASN][1000 genomes]
rs10985680	1.00[ASN][1000 genomes]
rs10985689	1.00[ASN][1000 genomes]
rs10985711	1.00[ASN][1000 genomes]
rs10985720	1.00[ASN][1000 genomes]
rs10985743	0.97[ASN][1000 genomes]
rs10985745	0.97[ASN][1000 genomes]
rs10985757	0.85[ASN][1000 genomes]
rs10985765	0.84[ASN][1000 genomes]
rs10985772	0.84[ASN][1000 genomes]
rs10985779	0.83[ASN][1000 genomes]
rs12237988	0.87[ASN][1000 genomes]
rs12346750	0.85[ASN][1000 genomes]
rs1435253	0.85[ASN][1000 genomes]
rs1435257	0.94[ASN][1000 genomes]
rs1573024	0.85[ASN][1000 genomes]
rs1573025	0.87[ASN][1000 genomes]
rs17766883	0.87[ASN][1000 genomes]
rs17766913	0.87[ASN][1000 genomes]
rs1935389	0.87[ASN][1000 genomes]
rs2900380	0.85[ASN][1000 genomes]
rs4379551	0.85[ASN][1000 genomes]
rs4742719	0.85[ASN][1000 genomes]
rs4742721	1.00[ASN][1000 genomes]
rs4742722	1.00[ASN][1000 genomes]
rs4743187	0.85[ASN][1000 genomes]
rs4743192	0.87[ASN][1000 genomes]
rs5010004	0.84[ASN][1000 genomes]
rs56262782	0.96[ASN][1000 genomes]
rs62574277	0.87[ASN][1000 genomes]
rs62574288	1.00[ASN][1000 genomes]
rs6478631	0.87[ASN][1000 genomes]
rs7032046	0.83[ASN][1000 genomes]
rs7853847	0.84[ASN][1000 genomes]
rs7859655	1.00[ASN][1000 genomes]
rs7873849	0.87[ASN][1000 genomes]
rs7874856	1.00[ASN][1000 genomes]
rs879368	0.85[ASN][1000 genomes]
rs9696283	0.86[ASN][1000 genomes]
rs9802466	0.85[ASN][1000 genomes]
rs9802650	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101026400-101036000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:101028200-101037000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:101033200-101036000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:101033400-101036200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:101034400-101038600	Weak transcription	K562	blood
6	chr9:101034600-101037000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:101035200-101037200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:101035400-101036000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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