Variant report

Variant	rs10818739
Chromosome Location	chr9:101053807-101053808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101053777..101056513-chr9:101062156..101064768,2	K562	blood:
2	chr9:100818995..100821317-chr9:101051621..101054241,2	K562	blood:
3	chr9:101053633..101055705-chr9:101074383..101076879,2	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10115971	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10123643	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10124977	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10760210	1.00[JPT][hapmap]
rs10760216	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10760218	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10818640	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10818662	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10818667	1.00[JPT][hapmap]
rs10818672	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10818676	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10818678	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10818691	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10818692	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10818693	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10818743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10985517	1.00[JPT][hapmap]
rs10985641	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985642	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985653	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985669	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985680	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985689	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985711	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985720	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10985743	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10985745	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10985757	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10985772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10985779	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10985780	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10985808	0.85[CHB][hapmap]
rs10985817	0.85[CHB][hapmap]
rs10985819	0.85[CHB][hapmap]
rs10985825	0.85[CHB][hapmap]
rs10985826	0.85[CHB][hapmap]
rs12237988	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1435253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435257	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1573025	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17766883	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17766913	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1897949	0.82[AFR][1000 genomes]
rs1935389	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2304389	0.85[CHB][hapmap]
rs2304390	0.85[CHB][hapmap]
rs3780444	0.85[CHB][hapmap]
rs3780445	0.85[CHB][hapmap]
rs4379551	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4742721	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4742722	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743187	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4743188	1.00[JPT][hapmap]
rs4743194	1.00[JPT][hapmap]
rs5010004	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56262782	0.82[ASN][1000 genomes]
rs62574288	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62574300	0.85[ASN][1000 genomes]
rs6478631	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7042576	1.00[JPT][hapmap]
rs7045158	1.00[JPT][hapmap]
rs73490762	0.89[AFR][1000 genomes]
rs7853442	1.00[JPT][hapmap]
rs7853847	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7856392	0.85[CHB][hapmap]
rs7859655	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7867465	0.85[CHB][hapmap]
rs7867834	0.85[CHB][hapmap]
rs7868451	1.00[JPT][hapmap]
rs7869257	0.85[CHB][hapmap]
rs7869364	0.85[CHB][hapmap]
rs7874856	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs879368	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs879369	1.00[JPT][hapmap]
rs9696283	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9802650	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101049000-101062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101049800-101060600	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101050000-101054000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:101050400-101055400	Enhancers	Placenta	Placenta
5	chr9:101050600-101064600	Weak transcription	Fetal Brain Female	brain
6	chr9:101051200-101055400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101052400-101054000	Weak transcription	Fetal Intestine Small	intestine
8	chr9:101052400-101054200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:101052400-101054600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:101052400-101065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:101052800-101054200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:101053000-101056000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:101053800-101054600	Enhancers	K562	blood
14	chr9:101053800-101054800	Enhancers	Fetal Intestine Large	intestine
15	chr9:101053800-101055400	Strong transcription	Brain Germinal Matrix	brain

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