Variant report

Variant	rs9696283
Chromosome Location	chr9:101051309-101051310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100971993..100974681-chr9:101050023..101052189,2	MCF-7	breast:
2	chr9:101045068..101047884-chr9:101049633..101052362,2	MCF-7	breast:
3	chr9:101049774..101053402-chr9:101054314..101056733,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10115971	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10124977	0.82[ASN][1000 genomes]
rs10818648	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10818656	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10818676	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10818677	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10818689	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10818690	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10818691	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10818692	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10818693	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10818739	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10818743	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10985583	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10985634	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10985641	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985642	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985653	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985669	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985680	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985689	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985711	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985720	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10985743	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10985745	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10985757	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10985765	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10985772	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10985779	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10985780	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12237988	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435253	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1435257	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1573025	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17766883	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17766913	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1935389	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4742721	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4742722	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4743192	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5010004	0.95[ASN][1000 genomes]
rs56262782	0.83[ASN][1000 genomes]
rs62574277	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62574288	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62574300	0.86[ASN][1000 genomes]
rs7853847	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7859655	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7873849	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7874856	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9802650	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101043400-101051400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:101049000-101062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:101049400-101053800	Weak transcription	Brain Germinal Matrix	brain
4	chr9:101049800-101060600	Weak transcription	Brain Angular Gyrus	brain
5	chr9:101050000-101053600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:101050000-101054000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101050400-101051400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101050400-101052200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:101050400-101055400	Enhancers	Placenta	Placenta
10	chr9:101050600-101051800	Enhancers	Hela-S3	cervix
11	chr9:101050600-101053000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:101050600-101064600	Weak transcription	Fetal Brain Female	brain
13	chr9:101051000-101051600	Enhancers	HSMMtube	muscle
14	chr9:101051000-101051800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr9:101051000-101051800	Enhancers	K562	blood
16	chr9:101051000-101052000	Bivalent Enhancer	HepG2	liver
17	chr9:101051000-101052400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:101051000-101052400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:101051000-101052400	Enhancers	Fetal Intestine Large	intestine
20	chr9:101051000-101052400	Enhancers	Fetal Intestine Small	intestine
21	chr9:101051200-101052000	Enhancers	Duodenum Mucosa	Duodenum
22	chr9:101051200-101055400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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