Variant report

Variant	rs1082054
Chromosome Location	chr9:93966070-93966071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1397574	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1705269	0.85[AMR][1000 genomes]
rs2457714	0.81[EUR][1000 genomes]
rs2478963	0.87[AMR][1000 genomes]
rs2482338	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2482340	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2494386	0.80[EUR][1000 genomes]
rs298718	0.81[EUR][1000 genomes]
rs773506	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs773509	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs773513	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs773514	0.83[EUR][1000 genomes]
rs773515	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9299391	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93959800-93969600	Weak transcription	Gastric	stomach
2	chr9:93961000-93969400	Weak transcription	Osteobl	bone
3	chr9:93961000-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:93961200-93969200	Weak transcription	Liver	Liver
5	chr9:93961200-93969600	Weak transcription	Right Atrium	heart
6	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:93962400-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:93962400-93969800	Weak transcription	K562	blood
9	chr9:93962600-93969600	Weak transcription	Stomach Mucosa	stomach
10	chr9:93963200-93969800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:93965200-93968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:93965400-93968800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:93965400-93969600	Weak transcription	Fetal Lung	lung
14	chr9:93965400-93969600	Weak transcription	Psoas Muscle	Psoas
15	chr9:93965800-93969400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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