Variant report

Variant	rs773509
Chromosome Location	chr9:93958422-93958423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93956099..93958842-chr9:93964995..93966534,2	MCF-7	breast:
2	chr9:93956736..93959501-chr9:93969407..93972748,3	K562	blood:
3	chr9:93953851..93958747-chr9:94181568..94185373,5	K562	blood:
4	chr9:93956551..93958888-chr9:94036316..94038161,2	K562	blood:
5	chr9:93957439..93960002-chr9:94175554..94177505,2	K562	blood:
6	chr9:93957539..93960381-chr9:94183192..94185284,2	K562	blood:
7	chr9:93957714..93959439-chr9:93968900..93970567,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273381	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1082054	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1397574	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1705269	0.86[AMR][1000 genomes]
rs2457714	0.82[EUR][1000 genomes]
rs2478963	0.88[AMR][1000 genomes]
rs2482338	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2482340	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2494386	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs298718	0.82[EUR][1000 genomes]
rs773506	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs773513	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs773514	0.84[EUR][1000 genomes]
rs773515	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9299391	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93954000-93959200	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr9:93955000-93960400	Enhancers	Fetal Heart	heart
3	chr9:93956200-93959000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:93956200-93959200	Enhancers	Lung	lung
5	chr9:93956400-93958600	Weak transcription	Ovary	ovary
6	chr9:93956400-93961600	Enhancers	Fetal Intestine Large	intestine
7	chr9:93956400-93963200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:93956600-93958600	Weak transcription	HMEC	breast
9	chr9:93956600-93958800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:93956600-93958800	Weak transcription	Brain Substantia Nigra	brain
11	chr9:93956600-93959000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:93956600-93959000	Enhancers	Right Ventricle	heart
13	chr9:93956600-93959000	Enhancers	Small Intestine	intestine
14	chr9:93956600-93959000	Enhancers	A549	lung
15	chr9:93956600-93959200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:93956600-93959200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:93956600-93959200	Enhancers	Left Ventricle	heart
18	chr9:93956600-93959200	Enhancers	Pancreas	Pancrea
19	chr9:93956600-93959600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:93956600-93959800	Enhancers	Placenta	Placenta
21	chr9:93956600-93960600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:93956600-93960600	Enhancers	Fetal Muscle Leg	muscle
23	chr9:93956600-93961000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:93956600-93961200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:93956600-93961200	Enhancers	Fetal Lung	lung
26	chr9:93956600-93961200	Enhancers	NHDF-Ad	bronchial
27	chr9:93956600-93961400	Enhancers	Colon Smooth Muscle	Colon
28	chr9:93956600-93961400	Enhancers	Fetal Intestine Small	intestine
29	chr9:93956600-93962000	Weak transcription	Aorta	Aorta
30	chr9:93956600-93962600	Enhancers	Stomach Mucosa	stomach
31	chr9:93956800-93958800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:93956800-93959000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:93956800-93959400	Weak transcription	NH-A	brain
34	chr9:93956800-93959600	Weak transcription	HSMMtube	muscle
35	chr9:93956800-93959800	Enhancers	Stomach Smooth Muscle	stomach
36	chr9:93956800-93961400	Enhancers	NHLF	lung
37	chr9:93956800-93962400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:93956800-93962400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr9:93957000-93958600	Weak transcription	Osteobl	bone
40	chr9:93957000-93959000	Enhancers	Thymus	Thymus
41	chr9:93957000-93959400	Enhancers	Brain Hippocampus Middle	brain
42	chr9:93957000-93959400	Enhancers	Colonic Mucosa	Colon
43	chr9:93957000-93959400	Enhancers	Duodenum Mucosa	Duodenum
44	chr9:93957000-93959600	Weak transcription	Brain Angular Gyrus	brain
45	chr9:93957000-93960400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr9:93957000-93962400	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr9:93957200-93958600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:93957200-93959600	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr9:93957200-93959800	Enhancers	Esophagus	oesophagus
50	chr9:93957400-93958800	Weak transcription	Brain Anterior Caudate	brain

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