Variant report

Variant	rs9299391
Chromosome Location	chr9:94017643-94017644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94016834..94019698-chr9:94185976..94188010,2	K562	blood:
2	chr9:94007375..94009783-chr9:94015701..94017804,2	K562	blood:
3	chr9:94010195..94012758-chr9:94017416..94020227,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1082054	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12552364	0.81[CHB][hapmap]
rs1397574	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1972090	0.85[CEU][hapmap]
rs1995933	0.82[EUR][1000 genomes]
rs2457714	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2478963	0.82[AMR][1000 genomes]
rs2482338	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2482340	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2494386	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs298718	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs298723	0.84[EUR][1000 genomes]
rs773506	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs773509	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs773513	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs773514	0.80[EUR][1000 genomes]
rs773515	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93982800-94032400	Weak transcription	Ovary	ovary
2	chr9:93983000-94027000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:93983000-94054000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:93983200-94027800	Weak transcription	Adipose Nuclei	Adipose
5	chr9:93984000-94052200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:93984000-94054600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:93984200-94024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:93984400-94026200	Weak transcription	Primary T cells from cord blood	blood
9	chr9:93995800-94018600	Weak transcription	Fetal Intestine Small	intestine
10	chr9:93995800-94052400	Weak transcription	Fetal Stomach	stomach
11	chr9:94002800-94032600	Weak transcription	Placenta	Placenta
12	chr9:94004600-94051800	Weak transcription	Liver	Liver
13	chr9:94008400-94018600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:94008400-94018600	Weak transcription	Esophagus	oesophagus
15	chr9:94008600-94036200	Weak transcription	HSMM	muscle
16	chr9:94008800-94017800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:94009400-94022400	Weak transcription	Fetal Brain Female	brain
18	chr9:94009600-94020400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:94009800-94018600	Weak transcription	Lung	lung
20	chr9:94009800-94018600	Weak transcription	Pancreas	Pancrea
21	chr9:94009800-94018800	Weak transcription	Right Ventricle	heart
22	chr9:94010000-94021600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:94010000-94031600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:94011400-94055400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr9:94011600-94018600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:94011600-94018600	Weak transcription	Right Atrium	heart
27	chr9:94011600-94019600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:94013200-94018600	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:94013600-94018800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:94014000-94018400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:94014000-94018800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:94015400-94020200	Enhancers	Fetal Heart	heart
33	chr9:94016000-94018600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:94016000-94025800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:94016000-94030400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:94016200-94018600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr9:94016200-94018600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:94016400-94023800	Weak transcription	HepG2	liver
39	chr9:94016600-94018600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr9:94016600-94019000	Enhancers	Fetal Lung	lung
41	chr9:94016600-94026400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:94016800-94018600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:94016800-94018600	Weak transcription	Fetal Thymus	thymus
44	chr9:94016800-94018600	Weak transcription	Left Ventricle	heart
45	chr9:94016800-94018600	Weak transcription	Psoas Muscle	Psoas
46	chr9:94016800-94019000	Enhancers	NHLF	lung
47	chr9:94017000-94019000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:94017000-94019000	Enhancers	NHDF-Ad	bronchial
49	chr9:94017200-94018600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr9:94017400-94018400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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