Variant report

Variant	rs10820905
Chromosome Location	chr9:94584121-94584122
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94576028..94578598-chr9:94581934..94584307,4	K562	blood:
2	chr9:94580430..94582585-chr9:94584118..94590050,5	K562	blood:
3	chr9:94580430..94582759-chr9:94584118..94590023,5	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10992126	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992134	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992136	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992144	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10992145	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11789730	0.80[EUR][1000 genomes]
rs11791450	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12376130	0.81[EUR][1000 genomes]
rs12378938	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12551140	0.83[AMR][1000 genomes]
rs12684524	0.80[AMR][1000 genomes]
rs1534530	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1881385	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1997286	0.83[AMR][1000 genomes]
rs2312733	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2312734	0.83[AMR][1000 genomes]
rs2312735	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55956910	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62563412	0.84[EUR][1000 genomes]
rs7030661	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7045226	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7847473	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850118	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7864311	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7865855	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6614	chr9:94571349-94610085	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94572400-94587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:94576800-94586200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:94580000-94585000	Weak transcription	Esophagus	oesophagus
4	chr9:94581000-94586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:94581800-94586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:94581800-94587600	Weak transcription	Spleen	Spleen
7	chr9:94581800-94588000	Weak transcription	Fetal Kidney	kidney
8	chr9:94582000-94584400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:94582400-94586200	Weak transcription	Fetal Lung	lung
10	chr9:94582600-94584200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:94583400-94584200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:94583400-94584200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:94583400-94584200	Enhancers	Rectal Smooth Muscle	rectum
14	chr9:94583400-94584200	Enhancers	NHDF-Ad	bronchial
15	chr9:94583600-94584200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr9:94583600-94584200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:94583600-94584200	Enhancers	Stomach Smooth Muscle	stomach
18	chr9:94583600-94584400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:94583600-94584400	Enhancers	Colon Smooth Muscle	Colon
20	chr9:94583800-94584200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:94583800-94584200	ZNF genes & repeats	Pancreas	Pancrea
22	chr9:94583800-94584800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:94583800-94585200	ZNF genes & repeats	Fetal Stomach	stomach
24	chr9:94583800-94586200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:94583800-94586400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:94583800-94586800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:94584000-94585400	Weak transcription	Ovary	ovary
28	chr9:94584000-94587200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:94584000-94595800	Weak transcription	Gastric	stomach

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