Variant report

Variant	rs7850118
Chromosome Location	chr9:94626543-94626544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94626467..94629171-chr9:94633400..94634901,2	K562	blood:
2	chr9:94619022..94622671-chr9:94625624..94629747,5	K562	blood:
3	chr9:94621154..94622760-chr9:94625624..94628222,3	K562	blood:
4	chr9:94600991..94603811-chr9:94624286..94626763,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10761132	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761133	0.81[CEU][hapmap]
rs10761135	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs10820905	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10820906	0.87[CEU][hapmap]
rs10820910	0.89[CEU][hapmap];0.80[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10992123	0.85[CEU][hapmap]
rs10992124	0.88[CEU][hapmap]
rs10992126	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992128	0.82[CEU][hapmap]
rs10992129	0.82[CEU][hapmap]
rs10992130	0.84[CEU][hapmap]
rs10992131	0.89[CEU][hapmap]
rs10992132	0.88[CEU][hapmap]
rs10992134	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992135	0.92[CEU][hapmap];0.80[AMR][1000 genomes]
rs10992136	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992137	0.88[CEU][hapmap]
rs10992139	0.89[CEU][hapmap]
rs10992142	0.92[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs10992143	0.85[CEU][hapmap]
rs10992144	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11789730	0.92[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11790144	0.89[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs11791450	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12376130	0.92[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12376539	0.84[CEU][hapmap]
rs12378938	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12551140	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs12552858	0.91[CEU][hapmap]
rs12684524	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12684533	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1528363	0.92[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1528364	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1534530	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534533	0.89[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907887	0.81[CEU][hapmap]
rs1881385	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1881387	0.84[CEU][hapmap]
rs1881392	0.88[CEU][hapmap]
rs1997286	0.82[AMR][1000 genomes]
rs2312732	0.92[CEU][hapmap]
rs2312733	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2312734	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs2312735	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4322068	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs4639579	0.81[CEU][hapmap]
rs4743857	0.88[CEU][hapmap]
rs4744107	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4744109	0.81[CEU][hapmap]
rs4744111	0.89[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744112	0.81[CEU][hapmap]
rs55956910	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62565675	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479374	0.84[CEU][hapmap]
rs6479375	0.85[CEU][hapmap]
rs6479376	0.81[CEU][hapmap]
rs6479377	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7019210	0.80[AMR][1000 genomes]
rs7029950	0.84[CEU][hapmap]
rs7030661	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7031562	0.92[CEU][hapmap]
rs7033819	0.85[CEU][hapmap]
rs7039406	0.89[CEU][hapmap]
rs7045226	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7048756	0.92[CEU][hapmap]
rs7847473	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7855417	0.81[CEU][hapmap]
rs7856144	0.84[CEU][hapmap]
rs7859331	0.85[CEU][hapmap]
rs7863061	0.81[CEU][hapmap]
rs7864311	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7865855	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7867707	0.81[CEU][hapmap]
rs7870049	0.84[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7874148	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	esv3487565	chr9:94622342-94626802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3487566	chr9:94622342-94626802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94621000-94627400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:94621200-94626600	Weak transcription	Fetal Thymus	thymus
3	chr9:94621400-94626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:94621400-94626600	Weak transcription	K562	blood
5	chr9:94621400-94626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:94621400-94627000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:94621400-94638000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:94623200-94627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:94623200-94629000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:94623200-94634000	Weak transcription	Fetal Intestine Small	intestine
11	chr9:94625600-94626600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:94626000-94626600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr9:94626000-94628200	Enhancers	Fetal Stomach	stomach
14	chr9:94626000-94628400	Enhancers	Fetal Lung	lung
15	chr9:94626000-94628600	Enhancers	Colon Smooth Muscle	Colon
16	chr9:94626400-94627000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:94626400-94627000	Enhancers	Fetal Muscle Leg	muscle
18	chr9:94626400-94627000	Enhancers	Gastric	stomach
19	chr9:94626400-94627200	Enhancers	Brain Germinal Matrix	brain
20	chr9:94626400-94627200	Enhancers	Fetal Brain Male	brain
21	chr9:94626400-94627600	Enhancers	Ovary	ovary
22	chr9:94626400-94628000	Enhancers	Fetal Heart	heart
23	chr9:94626400-94628000	Enhancers	Rectal Smooth Muscle	rectum
24	chr9:94626400-94628400	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:94626400-94628800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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