Variant report

Variant	rs7033819
Chromosome Location	chr9:94638008-94638009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94634801..94638279-chr9:94639316..94642885,4	K562	blood:
2	chr9:94636703..94639887-chr9:94643001..94646217,3	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10820906	0.91[CEU][hapmap]
rs10820907	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820908	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10820910	0.81[CEU][hapmap]
rs10820914	0.81[CHB][hapmap]
rs10992123	0.92[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992124	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992128	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992129	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992130	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992131	0.88[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs10992132	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992134	0.88[CEU][hapmap]
rs10992135	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10992136	0.88[CEU][hapmap]
rs10992137	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992139	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992140	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992142	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10992143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992144	0.92[CEU][hapmap]
rs10992145	0.89[CEU][hapmap]
rs10992149	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs10992151	0.81[CHB][hapmap]
rs11789730	0.92[CEU][hapmap]
rs11789973	0.80[CHB][hapmap]
rs11790144	0.96[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12376130	0.84[CEU][hapmap]
rs12376539	0.83[CEU][hapmap]
rs12378938	0.85[CEU][hapmap]
rs12551140	0.87[CEU][hapmap]
rs12552292	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12552858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12555334	0.86[CEU][hapmap]
rs12683797	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs12684524	0.83[CEU][hapmap]
rs1528363	0.84[CEU][hapmap]
rs1528364	0.84[CEU][hapmap]
rs1534531	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1534533	0.81[CEU][hapmap]
rs16907887	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1881385	0.83[CEU][hapmap]
rs1881387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881392	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2312732	0.84[CEU][hapmap]
rs2312734	0.87[CEU][hapmap]
rs2312735	0.83[CEU][hapmap]
rs2841691	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4322068	0.91[CEU][hapmap]
rs4639579	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743857	0.92[CEU][hapmap]
rs4744107	0.92[CEU][hapmap]
rs4744108	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744109	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744110	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744111	0.81[CEU][hapmap]
rs4744113	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs55663665	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55864279	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56088447	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56308784	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62564595	0.80[EUR][1000 genomes]
rs62564597	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62564598	0.81[EUR][1000 genomes]
rs62564599	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62565672	0.81[AFR][1000 genomes]
rs62565674	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479374	0.91[CEU][hapmap]
rs6479375	0.92[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs6479376	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67944481	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7019210	0.80[EUR][1000 genomes]
rs7029950	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs7030661	0.89[CEU][hapmap]
rs7031562	0.92[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs7039406	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7045226	0.88[CEU][hapmap]
rs7048756	0.92[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs7850118	0.85[CEU][hapmap]
rs7850636	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7855417	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7856144	0.91[CEU][hapmap]
rs7859331	0.92[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs7863061	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7867707	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7870902	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7874148	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94627000-94650800	Weak transcription	Gastric	stomach
2	chr9:94627200-94648600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:94627600-94647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94630400-94641400	Weak transcription	K562	blood
5	chr9:94631200-94639400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:94632800-94641000	Enhancers	Colon Smooth Muscle	Colon
7	chr9:94633000-94644600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:94634600-94638200	Enhancers	Rectal Smooth Muscle	rectum
9	chr9:94636200-94638200	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr9:94636200-94641800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:94636400-94638800	Enhancers	Ovary	ovary
12	chr9:94636400-94639800	Enhancers	Stomach Smooth Muscle	stomach
13	chr9:94636600-94639200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:94636600-94639200	Weak transcription	Right Atrium	heart
15	chr9:94636600-94639800	Weak transcription	Fetal Heart	heart
16	chr9:94636600-94642800	Weak transcription	Left Ventricle	heart
17	chr9:94636600-94646000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:94636600-94647200	Weak transcription	Fetal Intestine Large	intestine
19	chr9:94636800-94645400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:94637000-94640400	Weak transcription	Fetal Stomach	stomach
21	chr9:94637600-94638200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:94637600-94638200	Enhancers	Fetal Lung	lung
23	chr9:94637800-94638200	Enhancers	Fetal Muscle Leg	muscle
24	chr9:94637800-94639200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr9:94637800-94645000	Weak transcription	Fetal Intestine Small	intestine
26	chr9:94638000-94638200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr9:94638000-94638400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:94638000-94639000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr9:94638000-94643200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links