Variant report

Variant	rs7870902
Chromosome Location	chr9:94597812-94597813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94597146..94598805-chr9:94600443..94602240,2	K562	blood:
2	chr9:94597584..94599500-chr9:94607793..94610758,2	K562	blood:
3	chr9:94597586..94601465-chr9:94602257..94605897,5	K562	blood:
4	chr9:94596679..94601637-chr9:94602257..94606458,6	K562	blood:
5	chr9:94588743..94592515-chr9:94595352..94598489,3	MCF-7	breast:
6	chr9:94596693..94598646-chr9:94599586..94601943,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10820906	0.82[EUR][1000 genomes]
rs10820907	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10820908	0.85[EUR][1000 genomes]
rs10992123	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992124	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992128	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992129	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992130	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992132	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992137	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992139	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992140	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992143	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11789730	0.81[AMR][1000 genomes]
rs12376130	0.82[AMR][1000 genomes]
rs12376231	0.81[EUR][1000 genomes]
rs12376539	0.83[EUR][1000 genomes]
rs12551140	0.85[EUR][1000 genomes]
rs12552292	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12552858	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534531	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907887	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1881387	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1881392	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1997286	0.84[EUR][1000 genomes]
rs2312732	0.83[EUR][1000 genomes]
rs2312734	0.85[EUR][1000 genomes]
rs2841691	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4322068	0.83[EUR][1000 genomes]
rs4639579	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743857	0.82[EUR][1000 genomes]
rs4744108	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744109	0.85[EUR][1000 genomes]
rs4744110	0.85[EUR][1000 genomes]
rs55663665	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55864279	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56088447	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56308784	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62564595	0.81[EUR][1000 genomes]
rs62564597	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62564599	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62565674	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479374	0.82[EUR][1000 genomes]
rs6479375	0.81[EUR][1000 genomes]
rs6479376	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67944481	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7019210	0.81[EUR][1000 genomes]
rs7033819	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7039406	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045333	0.82[EUR][1000 genomes]
rs72746206	0.82[EUR][1000 genomes]
rs7850636	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7855417	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856144	0.82[EUR][1000 genomes]
rs7859331	0.81[EUR][1000 genomes]
rs7863061	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867707	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874148	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6614	chr9:94571349-94610085	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94594600-94610800	Enhancers	Fetal Thymus	thymus
2	chr9:94595400-94599800	Enhancers	Ovary	ovary
3	chr9:94595600-94598200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:94595600-94598400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:94595600-94599200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:94595600-94599800	Weak transcription	K562	blood
7	chr9:94595600-94600000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:94595600-94600600	Enhancers	Fetal Stomach	stomach
9	chr9:94595800-94598400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:94595800-94598400	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr9:94595800-94600200	Enhancers	Fetal Lung	lung
12	chr9:94596000-94598000	Enhancers	Fetal Intestine Small	intestine
13	chr9:94596000-94598200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:94596200-94598000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:94596200-94598200	Enhancers	Fetal Kidney	kidney
16	chr9:94596200-94598800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:94596200-94599000	Weak transcription	Gastric	stomach
18	chr9:94596400-94605200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:94596600-94598200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:94596600-94600200	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:94596600-94600400	Weak transcription	NHDF-Ad	bronchial
22	chr9:94596600-94600600	Weak transcription	Spleen	Spleen
23	chr9:94596800-94600800	Weak transcription	Esophagus	oesophagus
24	chr9:94597000-94599800	Enhancers	Fetal Heart	heart
25	chr9:94597000-94605800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:94597200-94600200	Enhancers	Colon Smooth Muscle	Colon
27	chr9:94597400-94598600	Weak transcription	Placenta	Placenta
28	chr9:94597600-94598000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:94597600-94598200	Enhancers	Fetal Muscle Leg	muscle
30	chr9:94597600-94598200	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr9:94597600-94599200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:94597600-94600400	Weak transcription	Fetal Intestine Large	intestine
33	chr9:94597600-94600600	Weak transcription	Pancreas	Pancrea
34	chr9:94597600-94601600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:94597800-94598200	Enhancers	Right Atrium	heart
36	chr9:94597800-94598400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr9:94597800-94598800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:94597800-94600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:94597800-94602800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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