Variant report

Variant	rs1997286
Chromosome Location	chr9:94585666-94585667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94580430..94582585-chr9:94584118..94590050,5	K562	blood:
2	chr9:94584589..94586242-chr9:94594324..94596965,2	K562	blood:
3	chr9:94580430..94582759-chr9:94584118..94590023,5	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10820905	0.83[AMR][1000 genomes]
rs10820906	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820907	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992123	0.81[EUR][1000 genomes]
rs10992124	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992126	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992128	0.82[EUR][1000 genomes]
rs10992129	0.82[EUR][1000 genomes]
rs10992131	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992135	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992136	0.82[AMR][1000 genomes]
rs10992142	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11791450	0.81[AMR][1000 genomes]
rs12376231	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376539	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12378938	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12551140	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552292	0.82[EUR][1000 genomes]
rs1534531	0.80[EUR][1000 genomes]
rs16907887	0.80[EUR][1000 genomes]
rs1881385	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2312732	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2312734	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2312735	0.83[AMR][1000 genomes]
rs4322068	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639579	0.82[EUR][1000 genomes]
rs4743857	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55663665	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62564595	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62564598	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479374	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479375	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479376	0.80[EUR][1000 genomes]
rs7019210	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7030661	0.82[AMR][1000 genomes]
rs7031562	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045226	0.82[AMR][1000 genomes]
rs7045333	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048756	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72746206	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850118	0.82[AMR][1000 genomes]
rs7855417	0.82[EUR][1000 genomes]
rs7856144	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859331	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7863061	0.81[EUR][1000 genomes]
rs7865855	0.83[AMR][1000 genomes]
rs7867707	0.82[EUR][1000 genomes]
rs7870902	0.84[EUR][1000 genomes]
rs7874148	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6614	chr9:94571349-94610085	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94572400-94587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:94576800-94586200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:94581000-94586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:94581800-94586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:94581800-94587600	Weak transcription	Spleen	Spleen
6	chr9:94581800-94588000	Weak transcription	Fetal Kidney	kidney
7	chr9:94582400-94586200	Weak transcription	Fetal Lung	lung
8	chr9:94583800-94586200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:94583800-94586400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:94583800-94586800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:94584000-94587200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:94584000-94595800	Weak transcription	Gastric	stomach
13	chr9:94584200-94586000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:94584200-94586000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:94584200-94586200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:94584200-94586400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:94584200-94587400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:94584400-94586400	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:94585200-94586400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:94585200-94586400	Weak transcription	Fetal Stomach	stomach
21	chr9:94585200-94586800	Weak transcription	Fetal Intestine Small	intestine
22	chr9:94585200-94587200	Weak transcription	Esophagus	oesophagus
23	chr9:94585600-94588600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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