Variant report

Variant	rs72746206
Chromosome Location	chr9:94595494-94595495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94591392..94592961-chr9:94594858..94596367,2	K562	blood:
2	chr9:94584589..94586242-chr9:94594324..94596965,2	K562	blood:
3	chr9:94588743..94592515-chr9:94595352..94598489,3	MCF-7	breast:
4	chr9:94586540..94588666-chr9:94592596..94596432,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10820906	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820907	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992123	0.83[EUR][1000 genomes]
rs10992124	0.82[EUR][1000 genomes]
rs10992128	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992129	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992130	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992131	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992132	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992134	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992135	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992137	0.80[EUR][1000 genomes]
rs10992142	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992144	0.81[AMR][1000 genomes]
rs11791450	0.81[AMR][1000 genomes]
rs12376231	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376539	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12378938	0.80[EUR][1000 genomes]
rs12551140	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552292	0.84[EUR][1000 genomes]
rs1534531	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16907887	0.83[EUR][1000 genomes]
rs1881392	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1997286	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2312732	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2312734	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2841691	0.83[EUR][1000 genomes]
rs4322068	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639579	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743857	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55663665	0.81[EUR][1000 genomes]
rs56088447	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62564595	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62564597	0.81[EUR][1000 genomes]
rs62564598	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62564599	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6479374	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479375	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479376	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7019210	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7031562	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7039406	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7045333	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048756	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7855417	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7856144	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859331	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7863061	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7867707	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7870902	0.82[EUR][1000 genomes]
rs7874148	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6614	chr9:94571349-94610085	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94584000-94595800	Weak transcription	Gastric	stomach
2	chr9:94588000-94595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:94588000-94596000	Weak transcription	Fetal Intestine Small	intestine
4	chr9:94588200-94595800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:94588200-94595800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:94592800-94595600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:94594000-94595600	Strong transcription	Fetal Stomach	stomach
8	chr9:94594200-94595600	Enhancers	K562	blood
9	chr9:94594600-94610800	Enhancers	Fetal Thymus	thymus
10	chr9:94594800-94595600	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:94595400-94595600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:94595400-94595600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:94595400-94596000	Enhancers	Stomach Smooth Muscle	stomach
14	chr9:94595400-94596600	Enhancers	Spleen	Spleen
15	chr9:94595400-94599800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links