Variant report

Variant	rs7863061
Chromosome Location	chr9:94601472-94601473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94599805..94602377-chr9:94607458..94609463,2	K562	blood:
2	chr9:94596693..94598646-chr9:94599586..94601943,2	K562	blood:
3	chr9:94600991..94603811-chr9:94624286..94626763,2	K562	blood:
4	chr9:94596679..94601637-chr9:94602257..94606458,6	K562	blood:
5	chr9:94597146..94598805-chr9:94600443..94602240,2	K562	blood:
6	chr9:94600587..94602440-chr9:94606824..94609770,3	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10820906	0.95[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs10820907	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10820908	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992123	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992124	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992130	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992131	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992132	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992134	0.83[CEU][hapmap]
rs10992135	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992136	0.84[CEU][hapmap]
rs10992137	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992139	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992140	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992142	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs10992143	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992144	0.88[CEU][hapmap]
rs10992145	0.84[CEU][hapmap]
rs10992149	0.81[CHB][hapmap]
rs11789730	0.87[CEU][hapmap]
rs11790144	0.92[CEU][hapmap];0.83[AMR][1000 genomes]
rs11791450	0.82[CEU][hapmap]
rs12376231	0.83[EUR][1000 genomes]
rs12376539	0.87[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs12378938	0.90[CEU][hapmap]
rs12551140	0.91[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs12552292	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12552858	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12555334	0.81[CEU][hapmap]
rs12683797	0.80[CHB][hapmap]
rs1528363	0.80[CEU][hapmap]
rs1528364	0.80[CEU][hapmap]
rs1534531	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1534535	0.82[EUR][1000 genomes]
rs16907887	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1881385	0.87[CEU][hapmap]
rs1881387	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1881392	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1997286	0.81[EUR][1000 genomes]
rs2141368	0.82[EUR][1000 genomes]
rs2312732	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2312734	0.91[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs2312735	0.87[CEU][hapmap]
rs2841691	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4322068	0.95[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4639579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743857	0.96[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744107	0.88[CEU][hapmap]
rs4744108	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744109	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs4744110	0.86[EUR][1000 genomes]
rs4744113	0.81[CHB][hapmap]
rs55663665	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55864279	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56088447	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56308784	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62564595	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62564597	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62564598	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62564599	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62565674	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479374	0.95[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479375	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6479376	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67944481	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7019210	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7029950	0.95[CEU][hapmap]
rs7030661	0.84[CEU][hapmap]
rs7031562	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7033819	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7039406	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045226	0.83[CEU][hapmap]
rs7045333	0.84[EUR][1000 genomes]
rs7048756	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72746206	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7850118	0.81[CEU][hapmap]
rs7850636	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7855417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856144	0.95[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7859331	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7867707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870902	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874148	0.95[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6614	chr9:94571349-94610085	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3436815	chr9:94599631-94603929	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94594600-94610800	Enhancers	Fetal Thymus	thymus
2	chr9:94596400-94605200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:94597000-94605800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:94597600-94601600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:94597800-94602800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:94598000-94604800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:94598200-94605600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:94599200-94601800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:94599200-94604400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:94599200-94604600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:94599400-94602000	Weak transcription	GM12878-XiMat	blood
12	chr9:94599800-94601800	Enhancers	K562	blood
13	chr9:94600000-94602800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:94600000-94605600	Weak transcription	Colonic Mucosa	Colon
15	chr9:94600200-94601600	Flanking Active TSS	Colon Smooth Muscle	Colon
16	chr9:94600200-94601600	Flanking Active TSS	Rectal Smooth Muscle	rectum
17	chr9:94600400-94601600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:94600400-94601600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr9:94600400-94602800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr9:94600600-94601600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr9:94600600-94601800	Weak transcription	Fetal Kidney	kidney
22	chr9:94600600-94602000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:94600600-94602200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:94600800-94602200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:94601000-94601600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:94601000-94601600	Enhancers	Fetal Muscle Trunk	muscle
27	chr9:94601000-94601600	Weak transcription	Gastric	stomach
28	chr9:94601000-94601600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr9:94601000-94601800	Enhancers	Hela-S3	cervix
30	chr9:94601000-94602200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr9:94601000-94603800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr9:94601000-94604600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:94601000-94605000	Weak transcription	Spleen	Spleen
34	chr9:94601000-94605600	Weak transcription	Fetal Intestine Large	intestine
35	chr9:94601000-94605600	Weak transcription	Lung	lung
36	chr9:94601000-94606000	Weak transcription	Stomach Mucosa	stomach
37	chr9:94601200-94601600	Enhancers	Ovary	ovary
38	chr9:94601200-94601600	Weak transcription	Pancreas	Pancrea
39	chr9:94601200-94602200	Enhancers	Fetal Muscle Leg	muscle
40	chr9:94601200-94602400	Enhancers	Right Atrium	heart
41	chr9:94601200-94602800	Enhancers	Fetal Stomach	stomach
42	chr9:94601200-94603600	Enhancers	Fetal Heart	heart
43	chr9:94601200-94605000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:94601200-94605000	Weak transcription	Brain Germinal Matrix	brain
45	chr9:94601200-94605200	Weak transcription	Fetal Intestine Small	intestine
46	chr9:94601400-94601600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:94601400-94601800	Enhancers	Fetal Lung	lung
48	chr9:94601400-94602000	Bivalent Enhancer	Fetal Brain Male	brain
49	chr9:94601400-94602200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:94601400-94603600	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links