Variant report

Variant	rs10820908
Chromosome Location	chr9:94640935-94640936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94640107..94642644-chr9:94644861..94647641,2	K562	blood:
2	chr9:94634167..94636496-chr9:94639519..94641175,2	MCF-7	breast:
3	chr9:94634801..94638279-chr9:94639316..94642885,4	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10820914	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992123	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992124	0.85[EUR][1000 genomes]
rs10992128	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992129	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992130	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992132	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992137	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992139	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992140	0.90[EUR][1000 genomes]
rs10992143	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992149	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992151	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11789973	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12552292	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12552858	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12555334	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12683797	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1534531	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16907887	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1881387	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1881392	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2030991	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2841691	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4517189	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4639579	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744108	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744109	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4744110	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4744113	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55663665	0.85[EUR][1000 genomes]
rs55864279	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56088447	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56308784	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57688942	0.80[AMR][1000 genomes]
rs58202197	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58431919	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59723153	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62564597	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62564599	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62565674	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62565678	0.81[AMR][1000 genomes]
rs6479376	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67944481	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7033819	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7039406	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7850636	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7855417	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7863061	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7867707	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7870902	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94627000-94650800	Weak transcription	Gastric	stomach
2	chr9:94627200-94648600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:94627600-94647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94630400-94641400	Weak transcription	K562	blood
5	chr9:94632800-94641000	Enhancers	Colon Smooth Muscle	Colon
6	chr9:94633000-94644600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:94636200-94641800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:94636600-94642800	Weak transcription	Left Ventricle	heart
9	chr9:94636600-94646000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:94636600-94647200	Weak transcription	Fetal Intestine Large	intestine
11	chr9:94636800-94645400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:94637800-94645000	Weak transcription	Fetal Intestine Small	intestine
13	chr9:94638000-94643200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:94638200-94642000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:94638200-94643000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:94638200-94643000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:94638200-94646200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:94638400-94641200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:94638400-94646000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:94638800-94644200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:94639200-94645200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:94639400-94641000	Strong transcription	Fetal Lung	lung
23	chr9:94639400-94641400	Weak transcription	Ovary	ovary
24	chr9:94639400-94645000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:94639800-94644000	Weak transcription	Right Atrium	heart
26	chr9:94639800-94647400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:94640400-94642600	Weak transcription	Fetal Heart	heart
28	chr9:94640400-94645200	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links