Variant report

Variant	rs10821046
Chromosome Location	chr9:95708192-95708193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95706512..95708726-chr9:95712017..95714192,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10121340	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10121856	0.90[GIH][hapmap];0.81[MEX][hapmap]
rs10124112	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10739940	0.90[GIH][hapmap]
rs10761182	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761189	1.00[YRI][hapmap]
rs10992564	0.90[GIH][hapmap]
rs12346994	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3936098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936099	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs4237217	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744161	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6479440	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs6479441	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479445	1.00[YRI][hapmap]
rs7021090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023321	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7023602	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7026624	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7032953	0.85[EUR][1000 genomes]
rs7039741	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7869421	0.90[GIH][hapmap]
rs9942965	0.90[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3373273	chr9:95707031-95711229	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10821046	ZNF484	cis	cerebellum	SCAN
rs10821046	ZNF484	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95702000-95709400	Weak transcription	Right Atrium	heart
2	chr9:95703400-95708200	Weak transcription	Brain Germinal Matrix	brain
3	chr9:95703600-95709200	Weak transcription	Spleen	Spleen
4	chr9:95704600-95709200	Weak transcription	HSMMtube	muscle
5	chr9:95705800-95708800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:95705800-95709000	Weak transcription	Fetal Brain Female	brain
7	chr9:95705800-95709200	Weak transcription	Esophagus	oesophagus
8	chr9:95706000-95708800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:95706000-95708800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr9:95706000-95708800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:95706400-95709000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:95706400-95709200	Weak transcription	HSMM	muscle
13	chr9:95706400-95709400	Weak transcription	Psoas Muscle	Psoas
14	chr9:95707000-95708400	Enhancers	Fetal Muscle Trunk	muscle
15	chr9:95707000-95708400	Enhancers	Fetal Muscle Leg	muscle
16	chr9:95707400-95708200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:95707400-95709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:95707600-95709600	Weak transcription	Ovary	ovary
19	chr9:95707800-95708600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr9:95708000-95709000	Weak transcription	Fetal Brain Male	brain

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