Variant report

Variant	rs6479441
Chromosome Location	chr9:95713362-95713363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95706512..95708726-chr9:95712017..95714192,2	K562	blood:
2	chr9:95711746..95713546-chr9:95716318..95718556,2	MCF-7	breast:
3	chr9:95700425..95702815-chr9:95713275..95715186,2	K562	blood:
4	chr9:95706988..95710231-chr9:95710858..95713457,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10121340	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10124112	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761182	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821046	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346994	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3936098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744161	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6479440	0.80[EUR][1000 genomes]
rs7021090	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023321	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7023602	0.86[ASN][1000 genomes]
rs7026624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7032953	0.84[EUR][1000 genomes]
rs7039741	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95710200-95715800	Weak transcription	Spleen	Spleen
2	chr9:95710200-95716400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:95711000-95714800	Weak transcription	Fetal Lung	lung
4	chr9:95711000-95715400	Enhancers	Fetal Brain Male	brain
5	chr9:95711400-95714800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:95711400-95715800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr9:95711600-95713400	Enhancers	Esophagus	oesophagus
8	chr9:95711600-95715000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:95712000-95713400	Enhancers	NHEK	skin
10	chr9:95712000-95714000	Enhancers	Primary T cells from cord blood	blood
11	chr9:95712000-95714800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:95712000-95715400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:95712000-95715800	Weak transcription	Lung	lung
14	chr9:95712000-95717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:95712200-95713400	Active TSS	Fetal Brain Female	brain
16	chr9:95712200-95715000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr9:95712200-95715600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:95712200-95715600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:95712200-95715800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:95712200-95715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:95712200-95715800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:95712200-95716000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr9:95712400-95714200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:95712400-95715200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr9:95712400-95715800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr9:95712600-95713400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:95712800-95713400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:95712800-95713600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:95712800-95714400	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr9:95713000-95713400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:95713000-95714800	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:95713200-95714800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr9:95713200-95714800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:95713200-95715800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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