Variant report

Variant	rs4237217
Chromosome Location	chr9:95716964-95716965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95711746..95713546-chr9:95716318..95718556,2	MCF-7	breast:
2	chr9:95685909..95687885-chr9:95716846..95719770,2	K562	blood:
3	chr9:95716673..95718561-chr9:95722423..95724467,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10121340	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10124112	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761182	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761189	1.00[YRI][hapmap]
rs10821046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12346994	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3936098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3936099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4744161	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6479440	0.88[CEU][hapmap]
rs6479441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479445	1.00[YRI][hapmap]
rs7021090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7023321	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7023602	0.84[ASN][1000 genomes]
rs7026624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7032953	0.83[EUR][1000 genomes]
rs7039741	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95712000-95717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95714800-95717000	Enhancers	Fetal Stomach	stomach
3	chr9:95714800-95717200	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr9:95714800-95717400	Flanking Active TSS	Brain Germinal Matrix	brain
5	chr9:95715000-95717400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr9:95715200-95717000	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:95715200-95717000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:95715200-95717000	Enhancers	HSMM	muscle
9	chr9:95715200-95717200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr9:95715400-95717000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:95715400-95717000	Enhancers	Left Ventricle	heart
12	chr9:95715400-95717200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:95715400-95717400	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr9:95715400-95717400	Enhancers	Duodenum Mucosa	Duodenum
15	chr9:95715400-95717800	Weak transcription	Fetal Brain Male	brain
16	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
17	chr9:95715600-95717200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:95715600-95717400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:95715600-95717400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr9:95715600-95718000	Enhancers	Fetal Thymus	thymus
21	chr9:95715800-95717000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr9:95715800-95717000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:95715800-95717000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr9:95715800-95717000	Enhancers	HSMMtube	muscle
25	chr9:95715800-95717200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:95715800-95717200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:95715800-95717200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr9:95715800-95717200	Enhancers	Spleen	Spleen
29	chr9:95715800-95717200	Enhancers	NH-A	brain
30	chr9:95715800-95717400	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr9:95715800-95717400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr9:95715800-95717400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr9:95715800-95717400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:95715800-95717400	Enhancers	Colonic Mucosa	Colon
35	chr9:95715800-95717400	Enhancers	Esophagus	oesophagus
36	chr9:95716000-95717000	Enhancers	Primary hematopoietic stem cells	blood
37	chr9:95716000-95717000	Flanking Active TSS	Dnd41	blood
38	chr9:95716000-95717200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr9:95716000-95717400	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr9:95716200-95717200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr9:95716200-95717200	Enhancers	Primary B cells from cord blood	blood
42	chr9:95716400-95717000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr9:95716400-95717000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:95716400-95717000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:95716400-95717000	Enhancers	Adipose Nuclei	Adipose
46	chr9:95716400-95717000	Enhancers	Placenta Amnion	Placenta Amnion
47	chr9:95716400-95717000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
48	chr9:95716400-95717000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr9:95716400-95717200	Flanking Active TSS	GM12878-XiMat	blood
50	chr9:95716400-95717400	Enhancers	Lung	lung

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