Variant report

Variant	rs10821662
Chromosome Location	chr10:61801739-61801740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61792166..61795045-chr10:61799901..61802727,2	K562	blood:
2	chr10:61799790..61802033-chr9:14680041..14681542,2	MCF-7	breast:
3	chr10:61384437..61387120-chr10:61801468..61804308,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10740004	1.00[ASW][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10740005	0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10761442	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10761445	0.84[CHB][hapmap]
rs1078534	0.83[CEU][hapmap]
rs10821660	0.84[CHB][hapmap]
rs10994162	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10994165	0.84[ASN][1000 genomes]
rs10994167	0.81[ASN][1000 genomes]
rs12413122	0.82[ASN][1000 genomes]
rs2393577	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs2393578	0.85[YRI][hapmap]
rs2393579	0.85[YRI][hapmap]
rs2393582	0.82[ASW][hapmap]
rs2393601	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393602	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2393603	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393604	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2393607	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap]
rs2393608	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2893823	0.84[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2893824	0.98[ASN][1000 genomes]
rs4431977	0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9888124	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3339152	chr10:61801420-61801770	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61786400-61815000	Weak transcription	Left Ventricle	heart
2	chr10:61788800-61803600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:61789200-61802800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:61789400-61807600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:61789600-61802800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
8	chr10:61790000-61803400	Weak transcription	Fetal Brain Male	brain
9	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
10	chr10:61791200-61803800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:61791200-61814200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:61791600-61828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:61791800-61803400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:61791800-61815400	Weak transcription	Fetal Intestine Large	intestine
15	chr10:61791800-61829400	Weak transcription	Fetal Intestine Small	intestine
16	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
17	chr10:61792000-61803000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
19	chr10:61792600-61802800	Weak transcription	Brain Angular Gyrus	brain
20	chr10:61792600-61815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:61792800-61802400	Weak transcription	Liver	Liver
22	chr10:61792800-61802800	Weak transcription	Brain Substantia Nigra	brain
23	chr10:61793000-61802400	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:61793200-61819000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:61794400-61803400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:61795600-61804000	Strong transcription	Placenta	Placenta
27	chr10:61795800-61802400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:61796000-61834800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:61797000-61803200	Weak transcription	HSMMtube	muscle
30	chr10:61797200-61819000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:61797200-61828200	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:61797600-61827600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr10:61797800-61803600	Weak transcription	NHDF-Ad	bronchial
34	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:61799200-61803200	Weak transcription	Ovary	ovary
36	chr10:61799600-61803400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:61799600-61803600	Enhancers	Fetal Lung	lung
38	chr10:61800000-61802600	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:61800000-61802800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:61800000-61819000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:61800400-61803400	Weak transcription	Osteobl	bone
42	chr10:61800600-61801800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:61800800-61802200	Enhancers	Duodenum Mucosa	Duodenum
44	chr10:61800800-61819000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr10:61801000-61801800	Enhancers	Brain Anterior Caudate	brain
46	chr10:61801000-61801800	Enhancers	Small Intestine	intestine
47	chr10:61801000-61802400	Weak transcription	Fetal Kidney	kidney
48	chr10:61801200-61802600	Strong transcription	Brain Cingulate Gyrus	brain
49	chr10:61801200-61803200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:61801200-61803600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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