Variant report

Variant	rs2393608
Chromosome Location	chr10:61802992-61802993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61384437..61387120-chr10:61801468..61804308,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf40-3	chr10:61802430-61804561	NONHSAT013536

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10740004	0.80[CHD][hapmap];0.91[MEX][hapmap]
rs10761442	0.94[EUR][1000 genomes]
rs10761445	0.84[CHB][hapmap]
rs1078534	0.88[CEU][hapmap]
rs10821660	0.84[CHB][hapmap]
rs10821662	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994165	0.84[ASN][1000 genomes]
rs10994167	0.81[ASN][1000 genomes]
rs12413122	0.84[ASN][1000 genomes]
rs2393577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2393601	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393602	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2393603	0.81[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393604	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2393607	0.81[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap]
rs2893823	0.84[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2893824	0.95[ASN][1000 genomes]
rs9888034	0.81[ASW][hapmap]
rs9888124	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551176	chr10:61802342-61814052	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61786400-61815000	Weak transcription	Left Ventricle	heart
2	chr10:61788800-61803600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:61789400-61807600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
6	chr10:61790000-61803400	Weak transcription	Fetal Brain Male	brain
7	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
8	chr10:61791200-61803800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:61791200-61814200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:61791600-61828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:61791800-61803400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:61791800-61815400	Weak transcription	Fetal Intestine Large	intestine
13	chr10:61791800-61829400	Weak transcription	Fetal Intestine Small	intestine
14	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
15	chr10:61792000-61803000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
17	chr10:61792600-61815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:61793200-61819000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:61794400-61803400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:61795600-61804000	Strong transcription	Placenta	Placenta
21	chr10:61796000-61834800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:61797000-61803200	Weak transcription	HSMMtube	muscle
23	chr10:61797200-61819000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:61797200-61828200	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:61797600-61827600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:61797800-61803600	Weak transcription	NHDF-Ad	bronchial
27	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:61799200-61803200	Weak transcription	Ovary	ovary
29	chr10:61799600-61803400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:61799600-61803600	Enhancers	Fetal Lung	lung
31	chr10:61800000-61819000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:61800400-61803400	Weak transcription	Osteobl	bone
33	chr10:61800800-61819000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:61801200-61803200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:61801200-61803600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:61801200-61803600	Enhancers	Stomach Mucosa	stomach
37	chr10:61801400-61803200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:61801400-61803400	Weak transcription	Aorta	Aorta
39	chr10:61801400-61803600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr10:61801400-61815600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:61801400-61818400	Weak transcription	K562	blood
42	chr10:61801600-61803000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:61801600-61803000	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr10:61801600-61803400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:61801600-61804000	Weak transcription	Fetal Heart	heart
46	chr10:61801600-61809600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:61801600-61813200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:61801800-61804000	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr10:61801800-61804000	Weak transcription	Brain Anterior Caudate	brain
50	chr10:61801800-61832600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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