Variant report

Variant	rs2393577
Chromosome Location	chr10:61801112-61801113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61650190..61652371-chr10:61798781..61801501,2	MCF-7	breast:
2	chr10:61792166..61795045-chr10:61799901..61802727,2	K562	blood:
3	chr10:61799790..61802033-chr9:14680041..14681542,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10761445	0.82[CHB][hapmap]
rs10821660	0.82[CHB][hapmap]
rs10821662	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10994165	0.83[ASN][1000 genomes]
rs12413122	0.81[ASN][1000 genomes]
rs2393601	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2393602	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2393603	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2393604	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2393607	1.00[CHB][hapmap]
rs2393608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2893823	0.82[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2893824	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9888124	0.83[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61783600-61801200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:61786400-61815000	Weak transcription	Left Ventricle	heart
3	chr10:61788800-61803600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:61789200-61802800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:61789400-61807600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:61789600-61802800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
9	chr10:61790000-61803400	Weak transcription	Fetal Brain Male	brain
10	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
11	chr10:61791200-61803800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:61791200-61814200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:61791600-61828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:61791800-61803400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:61791800-61815400	Weak transcription	Fetal Intestine Large	intestine
16	chr10:61791800-61829400	Weak transcription	Fetal Intestine Small	intestine
17	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
18	chr10:61792000-61801200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:61792000-61803000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
21	chr10:61792600-61802800	Weak transcription	Brain Angular Gyrus	brain
22	chr10:61792600-61815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:61792800-61802400	Weak transcription	Liver	Liver
24	chr10:61792800-61802800	Weak transcription	Brain Substantia Nigra	brain
25	chr10:61793000-61802400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:61793200-61819000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:61794400-61803400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:61795600-61804000	Strong transcription	Placenta	Placenta
29	chr10:61795800-61802400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:61796000-61834800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:61796400-61801600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:61797000-61803200	Weak transcription	HSMMtube	muscle
33	chr10:61797200-61819000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:61797200-61828200	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:61797600-61827600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:61797800-61803600	Weak transcription	NHDF-Ad	bronchial
37	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:61799000-61801600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:61799200-61803200	Weak transcription	Ovary	ovary
40	chr10:61799400-61801400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:61799600-61801600	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr10:61799600-61803400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:61799600-61803600	Enhancers	Fetal Lung	lung
44	chr10:61800000-61802600	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:61800000-61802800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:61800000-61819000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:61800200-61801200	Weak transcription	Stomach Mucosa	stomach
48	chr10:61800200-61801600	Strong transcription	Fetal Heart	heart
49	chr10:61800400-61803400	Weak transcription	Osteobl	bone
50	chr10:61800600-61801200	Enhancers	Rectal Mucosa Donor 29	rectum

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