Variant report

Variant	rs10826101
Chromosome Location	chr10:52249748-52249749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52248823..52250649-chr10:52255298..52257622,2	MCF-7	breast:
2	chr10:52229073..52233516-chr10:52246220..52249871,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225303	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10443954	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508926	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826032	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005316	1.00[ASN][1000 genomes]
rs11005345	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005595	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005612	0.80[EUR][1000 genomes]
rs11005708	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005730	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11005872	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005877	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005882	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005952	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005956	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006012	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11516712	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591645	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595661	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598794	1.00[ASN][1000 genomes]
rs12354779	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355439	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357733	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358247	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360058	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177372	1.00[ASN][1000 genomes]
rs3001855	1.00[ASN][1000 genomes]
rs3001884	1.00[ASN][1000 genomes]
rs56251625	1.00[ASN][1000 genomes]
rs57959812	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58969905	1.00[ASN][1000 genomes]
rs61739586	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071001	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078586	1.00[ASN][1000 genomes]
rs7078940	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082728	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091881	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096968	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099535	1.00[ASN][1000 genomes]
rs72787008	1.00[ASN][1000 genomes]
rs72803755	1.00[ASN][1000 genomes]
rs74131268	1.00[ASN][1000 genomes]
rs74131270	1.00[ASN][1000 genomes]
rs74131283	1.00[ASN][1000 genomes]
rs74131284	1.00[ASN][1000 genomes]
rs74132707	0.80[EUR][1000 genomes]
rs74132723	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477280	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908093	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52229800-52252000	Weak transcription	Aorta	Aorta
2	chr10:52230600-52256400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:52231200-52257800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:52234000-52261600	Weak transcription	Pancreas	Pancrea
5	chr10:52237000-52250400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:52237800-52255000	Weak transcription	Liver	Liver
7	chr10:52237800-52261800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:52243800-52250000	Weak transcription	Fetal Lung	lung
9	chr10:52244400-52261800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:52244800-52261800	Weak transcription	Primary T cells from cord blood	blood
11	chr10:52244800-52262000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:52246800-52251600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:52247000-52271200	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:52247200-52255200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:52248000-52261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:52248200-52256200	Weak transcription	Left Ventricle	heart
17	chr10:52248400-52250600	Enhancers	Fetal Heart	heart
18	chr10:52248800-52257600	Weak transcription	Ovary	ovary
19	chr10:52249200-52266800	Weak transcription	Primary B cells from cord blood	blood
20	chr10:52249400-52250000	Weak transcription	HSMMtube	muscle

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