Variant report

Variant	rs72787008
Chromosome Location	chr10:52438958-52438959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10826032	1.00[ASN][1000 genomes]
rs10826101	1.00[ASN][1000 genomes]
rs11005872	1.00[ASN][1000 genomes]
rs11005877	1.00[ASN][1000 genomes]
rs11005882	1.00[ASN][1000 genomes]
rs11005952	1.00[ASN][1000 genomes]
rs11005956	1.00[ASN][1000 genomes]
rs11006012	1.00[ASN][1000 genomes]
rs11516712	1.00[ASN][1000 genomes]
rs11595661	1.00[ASN][1000 genomes]
rs13376734	0.87[EUR][1000 genomes]
rs3001853	0.90[EUR][1000 genomes]
rs3001855	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3001856	0.90[EUR][1000 genomes]
rs3001857	0.90[EUR][1000 genomes]
rs3001858	0.91[EUR][1000 genomes]
rs3001859	0.94[EUR][1000 genomes]
rs3001860	0.86[EUR][1000 genomes]
rs3001861	0.94[EUR][1000 genomes]
rs3001864	0.94[EUR][1000 genomes]
rs3001865	0.87[EUR][1000 genomes]
rs3001866	0.94[EUR][1000 genomes]
rs3001867	0.95[EUR][1000 genomes]
rs3001884	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3011717	0.85[EUR][1000 genomes]
rs3011718	0.81[EUR][1000 genomes]
rs3011728	0.94[EUR][1000 genomes]
rs3011729	0.88[EUR][1000 genomes]
rs3011730	0.88[EUR][1000 genomes]
rs3011731	0.88[EUR][1000 genomes]
rs3011738	0.96[EUR][1000 genomes]
rs3011739	0.88[EUR][1000 genomes]
rs3011740	0.80[EUR][1000 genomes]
rs3011748	0.86[EUR][1000 genomes]
rs3011752	0.92[EUR][1000 genomes]
rs56153288	0.89[EUR][1000 genomes]
rs56266445	0.89[EUR][1000 genomes]
rs57025029	0.86[EUR][1000 genomes]
rs57959812	1.00[ASN][1000 genomes]
rs67094247	0.87[EUR][1000 genomes]
rs7067608	0.89[EUR][1000 genomes]
rs7071001	1.00[ASN][1000 genomes]
rs7074349	0.87[EUR][1000 genomes]
rs7077555	0.87[EUR][1000 genomes]
rs7077589	0.81[EUR][1000 genomes]
rs7078586	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078940	1.00[ASN][1000 genomes]
rs7082728	1.00[ASN][1000 genomes]
rs7091881	1.00[ASN][1000 genomes]
rs7096920	0.87[EUR][1000 genomes]
rs7096968	1.00[ASN][1000 genomes]
rs7099535	1.00[ASN][1000 genomes]
rs72803755	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897345	0.87[EUR][1000 genomes]
rs7904446	0.87[EUR][1000 genomes]
rs7908093	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv948007	chr10:52414948-52500270	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv8662	chr10:52416662-52461079	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv1808218	chr10:52437788-52448303	Bivalent/Poised TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52435000-52452400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:52435800-52440400	Weak transcription	K562	blood
3	chr10:52438200-52462000	Weak transcription	Spleen	Spleen
4	chr10:52438600-52439200	Enhancers	Lung	lung
5	chr10:52438800-52439200	Bivalent/Poised TSS	HepG2	liver

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