Variant report

Variant	rs3001884
Chromosome Location	chr10:52408491-52408492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52403097..52406343-chr10:52406363..52408843,3	K562	blood:
2	chr10:52404421..52406840-chr10:52407794..52409597,2	K562	blood:
3	chr10:52382543..52385482-chr10:52406980..52409003,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226200	Chromatin interaction
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10826032	1.00[ASN][1000 genomes]
rs10826101	1.00[ASN][1000 genomes]
rs11005708	1.00[ASN][1000 genomes]
rs11005872	1.00[ASN][1000 genomes]
rs11005877	1.00[ASN][1000 genomes]
rs11005882	1.00[ASN][1000 genomes]
rs11005952	1.00[ASN][1000 genomes]
rs11005956	1.00[ASN][1000 genomes]
rs11006012	1.00[ASN][1000 genomes]
rs11516712	1.00[ASN][1000 genomes]
rs11591645	1.00[ASN][1000 genomes]
rs11595661	1.00[ASN][1000 genomes]
rs13376734	0.95[EUR][1000 genomes]
rs2208037	0.84[EUR][1000 genomes]
rs2860490	0.84[EUR][1000 genomes]
rs2983363	0.83[EUR][1000 genomes]
rs2983365	0.84[EUR][1000 genomes]
rs3001853	0.98[EUR][1000 genomes]
rs3001855	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3001856	0.98[EUR][1000 genomes]
rs3001857	0.94[EUR][1000 genomes]
rs3001858	0.89[EUR][1000 genomes]
rs3001859	0.93[EUR][1000 genomes]
rs3001860	0.84[EUR][1000 genomes]
rs3001861	0.93[EUR][1000 genomes]
rs3001864	0.92[EUR][1000 genomes]
rs3001865	0.84[EUR][1000 genomes]
rs3001866	0.91[EUR][1000 genomes]
rs3001867	0.92[EUR][1000 genomes]
rs3011711	0.84[EUR][1000 genomes]
rs3011717	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3011718	0.88[EUR][1000 genomes]
rs3011728	0.93[EUR][1000 genomes]
rs3011729	0.87[EUR][1000 genomes]
rs3011730	0.87[EUR][1000 genomes]
rs3011731	0.87[EUR][1000 genomes]
rs3011738	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3011739	0.85[EUR][1000 genomes]
rs3011748	0.83[EUR][1000 genomes]
rs3011752	0.89[EUR][1000 genomes]
rs56153288	0.97[EUR][1000 genomes]
rs56266445	0.97[EUR][1000 genomes]
rs57025029	0.94[EUR][1000 genomes]
rs57959812	1.00[ASN][1000 genomes]
rs67094247	0.95[EUR][1000 genomes]
rs7067608	0.97[EUR][1000 genomes]
rs7071001	1.00[ASN][1000 genomes]
rs7074349	0.95[EUR][1000 genomes]
rs7077555	0.95[EUR][1000 genomes]
rs7078586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078940	1.00[ASN][1000 genomes]
rs7082728	1.00[ASN][1000 genomes]
rs7091881	1.00[ASN][1000 genomes]
rs7096920	0.95[EUR][1000 genomes]
rs7096968	1.00[ASN][1000 genomes]
rs7099535	1.00[ASN][1000 genomes]
rs72787008	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72803755	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74132723	1.00[ASN][1000 genomes]
rs7897345	0.95[EUR][1000 genomes]
rs7904446	0.95[EUR][1000 genomes]
rs7908093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52405000-52412800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr10:52407000-52409200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:52407200-52409600	Enhancers	Primary B cells from cord blood	blood
4	chr10:52407800-52409600	Enhancers	Fetal Intestine Large	intestine
5	chr10:52408000-52409200	Enhancers	GM12878-XiMat	blood
6	chr10:52408200-52413000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:52408400-52409000	Flanking Active TSS	Liver	Liver
8	chr10:52408400-52409000	Enhancers	HepG2	liver

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