Variant report
| Variant | rs10826350 |
|---|---|
| Chromosome Location | chr10:19032885-19032886 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | KAP1 | chr10:19032796-19033399 | HEK293 | kidney: | n/a | n/a |
| 2 | TRIM28 | chr10:19032804-19033266 | K562 | blood: | n/a | n/a |
| 3 | ZNF143 | chr10:19032850-19033221 | K562 | blood: | n/a | n/a |
| 4 | ZNF143 | chr10:19032869-19033181 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | SETDB1 | chr10:19032823-19033393 | U2OS | brain: | n/a | n/a |
| 6 | CBX3 | chr10:19032848-19033205 | K562 | blood: | n/a | n/a |
| 7 | CBX3 | chr10:19032851-19033208 | K562 | blood: | n/a | n/a |
| 8 | KAP1 | chr10:19032560-19033600 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234244 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10734067 | 0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10764710 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10764711 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10829264 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10829307 | 0.84[EUR][1000 genomes] |
| rs1387837 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1873313 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2009241 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2451515 | 0.97[EUR][1000 genomes] |
| rs35201297 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7097370 | 0.81[EUR][1000 genomes] |
| rs7097952 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894915 | chr10:18984571-19257664 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
