Variant report

Variant	rs1873313
Chromosome Location	chr10:19042094-19042095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10734067	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10764710	0.98[EUR][1000 genomes]
rs10764711	0.96[EUR][1000 genomes]
rs10826350	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829264	0.96[EUR][1000 genomes]
rs10829307	0.84[EUR][1000 genomes]
rs1387837	0.97[EUR][1000 genomes]
rs2009241	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2451515	0.97[EUR][1000 genomes]
rs35201297	0.90[EUR][1000 genomes]
rs7097370	0.81[EUR][1000 genomes]
rs7097952	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19042000-19042800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:19042000-19043000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:19042000-19043000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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