Variant report
| Variant | rs2451515 |
|---|---|
| Chromosome Location | chr10:19076636-19076637 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARL5B-6 | chr10:19076600-19076788 | NONHSAT011655 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10734067 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10764710 | 0.95[EUR][1000 genomes] |
| rs10764711 | 0.95[EUR][1000 genomes] |
| rs10826350 | 0.97[EUR][1000 genomes] |
| rs10829264 | 0.93[EUR][1000 genomes] |
| rs10829307 | 0.82[EUR][1000 genomes] |
| rs1387837 | 0.94[EUR][1000 genomes] |
| rs1873313 | 0.97[EUR][1000 genomes] |
| rs2009241 | 0.93[EUR][1000 genomes] |
| rs2495829 | 0.85[ASN][1000 genomes] |
| rs35201297 | 0.87[EUR][1000 genomes] |
| rs7097952 | 0.86[EUR][1000 genomes] |
| rs913653 | 0.80[AMR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894915 | chr10:18984571-19257664 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
