Variant report

Variant	rs1082719
Chromosome Location	chr12:67625797-67625798
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1066392	1.00[AFR][1000 genomes]
rs1082703	1.00[AFR][1000 genomes]
rs1082704	1.00[AFR][1000 genomes]
rs1082705	1.00[AFR][1000 genomes]
rs1082706	1.00[AFR][1000 genomes]
rs1082707	1.00[AFR][1000 genomes]
rs1082712	1.00[AFR][1000 genomes]
rs1082713	1.00[AMR][1000 genomes]
rs1082718	1.00[AMR][1000 genomes]
rs1143757	1.00[AFR][1000 genomes]
rs1143946	1.00[AFR][1000 genomes]
rs1143955	1.00[AFR][1000 genomes]
rs1152891	1.00[AFR][1000 genomes]
rs1152899	1.00[AFR][1000 genomes]
rs1152903	1.00[AFR][1000 genomes]
rs1186260	1.00[AFR][1000 genomes]
rs1252363	1.00[AFR][1000 genomes]
rs1252409	1.00[AFR][1000 genomes]
rs1252420	1.00[AFR][1000 genomes]
rs1252433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1252437	1.00[AMR][1000 genomes]
rs1252438	1.00[AMR][1000 genomes]
rs1392588	1.00[AFR][1000 genomes]
rs1392589	1.00[AFR][1000 genomes]
rs1658782	1.00[AFR][1000 genomes]
rs1697242	1.00[AMR][1000 genomes]
rs1697249	1.00[AFR][1000 genomes]
rs1732535	1.00[AMR][1000 genomes]
rs1732541	1.00[AFR][1000 genomes]
rs710621	1.00[AFR][1000 genomes]
rs710799	1.00[AFR][1000 genomes]
rs775311	1.00[AFR][1000 genomes]
rs775625	1.00[AFR][1000 genomes]
rs775627	1.00[AFR][1000 genomes]
rs775642	1.00[AFR][1000 genomes]
rs775643	1.00[AFR][1000 genomes]
rs775649	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs775664	1.00[AFR][1000 genomes]
rs812882	1.00[AFR][1000 genomes]
rs812883	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv899218	chr12:67612129-67643840	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67625200-67626800	Enhancers	Rectal Smooth Muscle	rectum
2	chr12:67625200-67627000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:67625600-67626000	Active TSS	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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