Variant report
| Variant | rs1252433 |
|---|---|
| Chromosome Location | chr12:67632347-67632348 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111530 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs1066392 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1082703 | 1.00[AFR][1000 genomes] |
| rs1082704 | 1.00[AFR][1000 genomes] |
| rs1082705 | 1.00[AFR][1000 genomes] |
| rs1082706 | 1.00[AFR][1000 genomes] |
| rs1082707 | 1.00[AFR][1000 genomes] |
| rs1082712 | 1.00[AFR][1000 genomes] |
| rs1082713 | 1.00[AMR][1000 genomes] |
| rs1082718 | 1.00[AMR][1000 genomes] |
| rs1082719 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1143757 | 1.00[AFR][1000 genomes] |
| rs1143946 | 1.00[AFR][1000 genomes] |
| rs1143955 | 1.00[AFR][1000 genomes] |
| rs1152891 | 1.00[AFR][1000 genomes] |
| rs1152899 | 1.00[AFR][1000 genomes] |
| rs1152903 | 1.00[AFR][1000 genomes] |
| rs1186260 | 1.00[AFR][1000 genomes] |
| rs1252363 | 1.00[AFR][1000 genomes] |
| rs1252409 | 1.00[AFR][1000 genomes] |
| rs1252420 | 1.00[AFR][1000 genomes] |
| rs1252437 | 1.00[AMR][1000 genomes] |
| rs1252438 | 1.00[AMR][1000 genomes] |
| rs1392588 | 1.00[AFR][1000 genomes] |
| rs1392589 | 1.00[AFR][1000 genomes] |
| rs1658782 | 1.00[AFR][1000 genomes] |
| rs1697242 | 1.00[AMR][1000 genomes] |
| rs1697249 | 1.00[AFR][1000 genomes] |
| rs1732535 | 1.00[AMR][1000 genomes] |
| rs1732541 | 1.00[AFR][1000 genomes] |
| rs710621 | 1.00[AFR][1000 genomes] |
| rs710799 | 1.00[AFR][1000 genomes] |
| rs775311 | 1.00[AFR][1000 genomes] |
| rs775625 | 1.00[AFR][1000 genomes] |
| rs775627 | 1.00[AFR][1000 genomes] |
| rs775642 | 1.00[AFR][1000 genomes] |
| rs775643 | 1.00[AFR][1000 genomes] |
| rs775649 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs775664 | 1.00[AFR][1000 genomes] |
| rs812882 | 1.00[AFR][1000 genomes] |
| rs812883 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054111 | chr12:67556780-67865542 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 4 | nsv899218 | chr12:67612129-67643840 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
