Variant report

Variant	rs10828397
Chromosome Location	chr10:23302098-23302099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1054052	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764371	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828396	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013239	0.82[AFR][1000 genomes]
rs11013240	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013242	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11013244	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11814322	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17441682	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2219797	0.86[ASN][1000 genomes]
rs6482247	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7901137	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23300000-23303800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23300400-23303400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:23300800-23302200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:23301000-23303000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:23301400-23311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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