Variant report

Variant	rs11013244
Chromosome Location	chr10:23305232-23305233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23287418..23289094-chr10:23304568..23306972,2	K562	blood:
2	chr10:23303236..23310250-chr10:23341340..23346193,13	K562	blood:
3	chr10:23304838..23306425-chr10:23312487..23315247,2	K562	blood:
4	chr10:23302995..23309769-chr10:23341340..23346193,8	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1054052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1060761	0.84[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs10764371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10764374	0.94[AMR][1000 genomes]
rs10828394	0.82[AMR][1000 genomes]
rs10828396	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10828397	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10828400	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11013228	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes]
rs11013240	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11013242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1170929	0.80[AMR][1000 genomes]
rs11814322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814683	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11817610	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs11819616	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs12780334	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes]
rs1382577	0.89[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17441682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2219797	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2927925	0.83[JPT][hapmap]
rs3101795	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs4748833	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58091240	0.90[AMR][1000 genomes]
rs6482247	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482249	0.92[AMR][1000 genomes]
rs7901137	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975810	chr10:23302287-23306366	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23301400-23311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:23304000-23305400	Enhancers	K562	blood
3	chr10:23304600-23305400	Enhancers	GM12878-XiMat	blood

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