Variant report

Variant	rs3101795
Chromosome Location	chr10:23263945-23263946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1060761	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013228	0.96[CEU][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11013244	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs1148301	0.81[JPT][hapmap]
rs1170929	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11814322	0.84[CEU][hapmap]
rs11814683	0.80[CEU][hapmap]
rs11817610	0.89[CEU][hapmap];0.91[MEX][hapmap]
rs11819616	0.89[CEU][hapmap]
rs12780334	0.87[MEX][hapmap]
rs1382577	0.96[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2927924	0.86[CHB][hapmap]
rs2927925	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2952405	0.99[ASN][1000 genomes]
rs4748833	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3101795	PTF1A	cis	cerebellum	SCAN
rs3101795	ENKUR	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23262400-23264200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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