Variant report

Variant	rs12780334
Chromosome Location	chr10:23324509-23324510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23321872..23324823-chr10:23325751..23328597,3	K562	blood:
2	chr10:23277498..23278226-chr10:23324256..23324933,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1054052	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1060761	0.83[MEX][hapmap]
rs10764371	0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs10764374	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764375	0.84[ASN][1000 genomes]
rs10828400	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828401	0.86[ASN][1000 genomes]
rs11013228	0.81[CEU][hapmap];0.92[MEX][hapmap]
rs11013242	0.91[AMR][1000 genomes]
rs11013244	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes]
rs11013273	0.85[ASN][1000 genomes]
rs11814322	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes]
rs11814683	0.81[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs11817610	0.88[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap]
rs11819616	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs1382577	0.81[CEU][hapmap]
rs1382579	0.84[ASN][1000 genomes]
rs1382580	0.85[ASN][1000 genomes]
rs17441682	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2219797	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3101795	0.87[MEX][hapmap]
rs4748833	0.88[CEU][hapmap]
rs4748836	0.84[ASN][1000 genomes]
rs4748837	0.83[ASN][1000 genomes]
rs58091240	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6482247	0.91[AMR][1000 genomes]
rs6482249	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078726	0.86[ASN][1000 genomes]
rs7898352	0.86[JPT][hapmap]
rs7901137	0.90[AMR][1000 genomes]
rs7918170	0.84[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23320400-23325400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:23320600-23325600	Weak transcription	Brain Angular Gyrus	brain
3	chr10:23324200-23326000	Enhancers	Brain Hippocampus Middle	brain

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