Variant report

Variant	rs1060761
Chromosome Location	chr10:23273110-23273111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23272365..23274882-chr10:23341922..23344202,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1054052	0.81[JPT][hapmap]
rs10764371	0.81[JPT][hapmap]
rs10828394	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11013228	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013242	0.80[AMR][1000 genomes]
rs11013244	0.84[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs1148301	0.83[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs1170929	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814322	0.84[CEU][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs11814683	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs11817610	0.89[CEU][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs11819616	0.89[CEU][hapmap];0.80[JPT][hapmap]
rs12780334	0.83[MEX][hapmap]
rs1382577	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17441682	0.80[AMR][1000 genomes]
rs2927925	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2952405	0.90[ASN][1000 genomes]
rs3101795	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748833	0.89[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482247	0.80[AMR][1000 genomes]
rs7084413	0.91[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1060761	BMI1	cis	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23265000-23277600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:23268000-23274200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:23268200-23277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:23270600-23276000	Weak transcription	Brain Angular Gyrus	brain
5	chr10:23270600-23277600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:23270800-23274400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:23271400-23273200	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:23272400-23273200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:23272400-23275600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:23272600-23273200	Enhancers	Brain Substantia Nigra	brain
11	chr10:23272600-23273400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:23273000-23273200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:23273000-23273400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr10:23273000-23274800	Weak transcription	Brain Anterior Caudate	brain

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