Variant report
| Variant | rs1382579 |
|---|---|
| Chromosome Location | chr10:23332946-23332947 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1054052 | 0.81[JPT][hapmap] |
| rs10764371 | 0.81[JPT][hapmap] |
| rs10764374 | 0.84[ASN][1000 genomes] |
| rs10764375 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10828400 | 0.84[ASN][1000 genomes] |
| rs10828401 | 0.98[ASN][1000 genomes] |
| rs11013273 | 0.98[ASN][1000 genomes] |
| rs11814322 | 0.81[JPT][hapmap] |
| rs11814683 | 0.80[JPT][hapmap] |
| rs12763296 | 0.85[YRI][hapmap] |
| rs12780334 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1382580 | 0.99[ASN][1000 genomes] |
| rs4747451 | 1.00[YRI][hapmap] |
| rs4748835 | 0.84[MEX][hapmap] |
| rs4748836 | 0.97[ASN][1000 genomes] |
| rs4748837 | 0.97[ASN][1000 genomes] |
| rs6482249 | 0.85[ASN][1000 genomes] |
| rs7070539 | 0.90[MEX][hapmap] |
| rs7078726 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7089828 | 0.85[YRI][hapmap] |
| rs7898352 | 0.82[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap] |
| rs7914172 | 0.90[MEX][hapmap] |
| rs7918170 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs899376 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:23332200-23333000 | Weak transcription | K562 | blood |
