Variant report

Variant	rs7070539
Chromosome Location	chr10:23301542-23301543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23301107..23302880-chr10:23315707..23318536,2	K562	blood:
2	chr10:23301145..23302883-chr10:23341346..23344238,2	K562	blood:
3	chr10:23293236..23296028-chr10:23300295..23302745,2	MCF-7	breast:
4	chr10:23297640..23302791-chr10:23338306..23344811,10	K562	blood:
5	chr10:23298223..23301629-chr10:23333237..23336765,3	K562	blood:

Variant related genes	Relation type
ENSG00000165309	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10082382	0.83[ASN][1000 genomes]
rs10741013	0.86[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10741014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764370	0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10764371	0.83[CHB][hapmap]
rs10764372	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10828393	0.86[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs1148302	0.89[JPT][hapmap]
rs1170665	0.83[CHD][hapmap]
rs11814683	0.82[CHB][hapmap]
rs2927924	1.00[CEU][hapmap]
rs4747451	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4748831	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs4748832	0.86[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs4748835	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap]
rs7074488	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7075999	0.95[ASN][1000 genomes]
rs7079729	0.95[ASN][1000 genomes]
rs7080677	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7909174	0.84[ASN][1000 genomes]
rs7914172	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7917324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs899376	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs993352	0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23300000-23303800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23300400-23303400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:23300800-23302200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:23301000-23303000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:23301400-23311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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