Variant report

Variant	rs7079729
Chromosome Location	chr10:23305707-23305708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10082382	0.81[ASN][1000 genomes]
rs10741013	0.82[ASN][1000 genomes]
rs10741014	0.95[ASN][1000 genomes]
rs10764370	0.80[ASN][1000 genomes]
rs10764372	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828393	0.80[ASN][1000 genomes]
rs10828401	0.89[AMR][1000 genomes]
rs1382580	0.88[AMR][1000 genomes]
rs4748831	0.82[ASN][1000 genomes]
rs4748832	0.80[ASN][1000 genomes]
rs4748836	0.81[AMR][1000 genomes]
rs4748837	0.86[AMR][1000 genomes]
rs7070539	0.95[ASN][1000 genomes]
rs7074488	0.87[ASN][1000 genomes]
rs7075999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080677	0.99[ASN][1000 genomes]
rs7909174	0.82[ASN][1000 genomes]
rs993352	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975810	chr10:23302287-23306366	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23301400-23311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:23305400-23306000	Flanking Active TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links