Variant report

Variant	rs10828393
Chromosome Location	chr10:23289062-23289063
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23287418..23289094-chr10:23304568..23306972,2	K562	blood:
2	chr10:23281876..23284605-chr10:23287991..23291315,3	K562	blood:
3	chr10:23286320..23291300-chr10:23340827..23345371,11	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10082382	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741013	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10741014	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10764370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764372	0.86[CHB][hapmap];0.95[CHD][hapmap];0.82[MEX][hapmap]
rs10828391	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1148302	0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs1170665	0.82[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs1300432	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2927924	0.83[JPT][hapmap]
rs4747451	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs4748831	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748832	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748835	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs7070539	0.86[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs7075999	0.80[ASN][1000 genomes]
rs7079729	0.80[ASN][1000 genomes]
rs7080677	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7898352	0.86[MEX][hapmap]
rs7909174	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7914172	0.86[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap]
rs7917324	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs993352	0.83[CHD][hapmap];0.86[MEX][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23282800-23294200	Weak transcription	Pancreas	Pancrea
2	chr10:23286400-23290000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:23287400-23290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:23288800-23290600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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