Variant report

Variant	rs1170665
Chromosome Location	chr10:23274996-23274997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10082382	0.80[ASN][1000 genomes]
rs10741013	0.82[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs10764370	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs10764372	0.83[CHD][hapmap]
rs10828391	0.90[ASN][1000 genomes]
rs10828393	0.82[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs1148302	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs1300432	0.95[ASN][1000 genomes]
rs2927924	0.86[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs4748831	0.81[ASN][1000 genomes]
rs4748832	0.82[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs4748835	0.82[CHD][hapmap]
rs7070539	0.83[CHD][hapmap]
rs7909174	0.83[ASN][1000 genomes]
rs7914172	0.83[CHD][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23265000-23277600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:23268200-23277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:23270600-23276000	Weak transcription	Brain Angular Gyrus	brain
4	chr10:23270600-23277600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:23272400-23275600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:23273200-23275600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:23273200-23276800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:23273400-23277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:23274800-23275000	Enhancers	Brain Anterior Caudate	brain
10	chr10:23274800-23275000	Enhancers	Brain Cingulate Gyrus	brain
11	chr10:23274800-23277600	Enhancers	Brain Hippocampus Middle	brain
12	chr10:23274800-23277800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links