Variant report

Variant	rs10831071
Chromosome Location	chr11:93339252-93339253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10831070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831078	0.83[ASN][1000 genomes]
rs11020424	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020446	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11020484	1.00[YRI][hapmap]
rs12791296	0.82[ASN][1000 genomes]
rs2212439	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4396249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123348	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7942374	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93336600-93339600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:93337400-93339600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:93337800-93342800	Weak transcription	Fetal Intestine Large	intestine
4	chr11:93337800-93343000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:93337800-93343200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:93338000-93339400	Enhancers	Fetal Brain Male	brain
7	chr11:93338200-93340200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:93338400-93339400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:93338600-93339800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:93338600-93340200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:93338800-93339400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:93338800-93339400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:93338800-93339600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:93338800-93339600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:93338800-93340200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:93339000-93339400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:93339000-93339400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:93339000-93339400	Enhancers	Brain Germinal Matrix	brain
19	chr11:93339000-93339600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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